; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G000490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G000490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionYae1_N domain-containing protein
Genome locationchr04:633856..644166
RNA-Seq ExpressionLsi04G000490
SyntenyLsi04G000490
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0004386 - helicase activity (molecular function)
InterPro domainsIPR019191 - Essential protein Yae1, N-terminal
IPR038881 - Yae1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022957528.1 uncharacterized protein LOC111458903 [Cucurbita moschata]4.6e-5885.31Show/hide
Query:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN
        IGYRDGLIAGKEAA+QEGFNVGFKQSVS+GYKLGLVRGVSSVLAS PDD+KEKL GIEE RSKFQSLYESVNSLST DALRLF+DDI AQ TKEE V+AN
Subjt:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN

Query:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ
        T+SQ+ DLLK+NSDYGRL +FYGEL+ALL KSPALN+HLHEEQ
Subjt:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ

XP_022990784.1 uncharacterized protein LOC111487537 isoform X1 [Cucurbita maxima]1.0e-5784.62Show/hide
Query:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN
        IGYRDGLIAGKEAA+QEGFNVGFKQSVS+GYKLGLVRGVSSVLAS PDD+KEKL GIEENRSKFQSLYESVNSLST DALRLF+DDI AQ TKEE V+AN
Subjt:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN

Query:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ
        T+SQ+ DLLK+NSDY RL +FYGEL+ALL  SPALN+HLHEEQ
Subjt:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ

XP_022990860.1 uncharacterized protein LOC111487537 isoform X2 [Cucurbita maxima]1.0e-5784.62Show/hide
Query:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN
        IGYRDGLIAGKEAA+QEGFNVGFKQSVS+GYKLGLVRGVSSVLAS PDD+KEKL GIEENRSKFQSLYESVNSLST DALRLF+DDI AQ TKEE V+AN
Subjt:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN

Query:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ
        T+SQ+ DLLK+NSDY RL +FYGEL+ALL  SPALN+HLHEEQ
Subjt:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ

XP_022990940.1 uncharacterized protein LOC111487537 isoform X3 [Cucurbita maxima]1.0e-5784.62Show/hide
Query:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN
        IGYRDGLIAGKEAA+QEGFNVGFKQSVS+GYKLGLVRGVSSVLAS PDD+KEKL GIEENRSKFQSLYESVNSLST DALRLF+DDI AQ TKEE V+AN
Subjt:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN

Query:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ
        T+SQ+ DLLK+NSDY RL +FYGEL+ALL  SPALN+HLHEEQ
Subjt:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ

XP_038891531.1 protein YAE1-like [Benincasa hispida]6.1e-5885.92Show/hide
Query:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN
        IGYRDG+IAGKEAAAQEGFNVGFKQSVS+GYK GLVRGVSSVLAS PDD+KEKLAGIEENRSKFQSLYESVNSLSTVDALRLFND+IT QR KEE +NAN
Subjt:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN

Query:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEE
        TN++S DLLK+ SDY RL KFY ELEALL KSPALNVHLHE+
Subjt:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEE

TrEMBL top hitse value%identityAlignment
A0A1S4DX60 uncharacterized protein LOC1034894872.5e-5785.31Show/hide
Query:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN
        IGYRDGLIAGKEAAAQEGFN+GFKQSVSVGYKLGLVRGVSSVLAS PDD+KEKLAG  EN+SKFQSLYESVNSLSTVDALRLFN DIT Q TKEE V+AN
Subjt:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN

Query:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ
        TNSQ+ DLLKKN DYGRL KFY EL A L +SPALNVHLHEE+
Subjt:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ

A0A6J1H273 uncharacterized protein LOC1114589032.2e-5885.31Show/hide
Query:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN
        IGYRDGLIAGKEAA+QEGFNVGFKQSVS+GYKLGLVRGVSSVLAS PDD+KEKL GIEE RSKFQSLYESVNSLST DALRLF+DDI AQ TKEE V+AN
Subjt:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN

Query:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ
        T+SQ+ DLLK+NSDYGRL +FYGEL+ALL KSPALN+HLHEEQ
Subjt:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ

A0A6J1JR95 uncharacterized protein LOC111487537 isoform X25.0e-5884.62Show/hide
Query:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN
        IGYRDGLIAGKEAA+QEGFNVGFKQSVS+GYKLGLVRGVSSVLAS PDD+KEKL GIEENRSKFQSLYESVNSLST DALRLF+DDI AQ TKEE V+AN
Subjt:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN

Query:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ
        T+SQ+ DLLK+NSDY RL +FYGEL+ALL  SPALN+HLHEEQ
Subjt:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ

A0A6J1JRH1 uncharacterized protein LOC111487537 isoform X35.0e-5884.62Show/hide
Query:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN
        IGYRDGLIAGKEAA+QEGFNVGFKQSVS+GYKLGLVRGVSSVLAS PDD+KEKL GIEENRSKFQSLYESVNSLST DALRLF+DDI AQ TKEE V+AN
Subjt:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN

Query:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ
        T+SQ+ DLLK+NSDY RL +FYGEL+ALL  SPALN+HLHEEQ
Subjt:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ

A0A6J1JSZ3 uncharacterized protein LOC111487537 isoform X15.0e-5884.62Show/hide
Query:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN
        IGYRDGLIAGKEAA+QEGFNVGFKQSVS+GYKLGLVRGVSSVLAS PDD+KEKL GIEENRSKFQSLYESVNSLST DALRLF+DDI AQ TKEE V+AN
Subjt:  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN

Query:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ
        T+SQ+ DLLK+NSDY RL +FYGEL+ALL  SPALN+HLHEEQ
Subjt:  TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G34550.1 Protein of unknown function (DUF616)7.5e-0636.84Show/hide
Query:  SVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPAL
        +VLA  PD+++EKL   +E R KFQ L+  V++LST  A++ F   +T   TKE    +  N+         SD+G    +  EL +LL KSP +
Subjt:  SVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPAL

AT1G34570.1 Essential protein Yae1, N-terminal1.8e-2344.29Show/hide
Query:  GYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITA----QRTKEERV
        GYRDG++ GKEA AQEG+N G+K+SV  GYK G+VRGVSS LA  P + +EKL   +E R KFQ L+ SV++LST  A++ F + +T     +++ EE  
Subjt:  GYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITA----QRTKEERV

Query:  NANTNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNV
        ++ + S S   +   +D G    +  EL +LL KSP + V
Subjt:  NANTNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNV

AT3G15750.1 Essential protein Yae1, N-terminal3.2e-2545.71Show/hide
Query:  GYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITA----QRTKEERV
        GYRDG++AGKEA AQEG+N G+K+SV  GY+ GLVRGVSS LA  PD+++EKL   +E R KFQ L+ SV++LST  A++ F + +T     +++ EE  
Subjt:  GYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITA----QRTKEERV

Query:  NANTNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNV
        ++ ++S S   +   +D G    +  EL +LL KSP + V
Subjt:  NANTNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCTTCCCGTGTGTCTAAGCTTTCTTTGAGCAAAATTGGGGCTATAATTGGATACCGCGATGGCTTAATTGCTGGGAAAGAAGCTGCAGCTCAAGAGGGATTTAA
TGTTGGCTTCAAGCAGTCAGTCTCTGTCGGATATAAATTGGGTCTTGTCAGAGGTGTTAGCAGTGTGCTTGCTTCCTTTCCTGATGACGTGAAAGAGAAGCTTGCAGGAA
TTGAAGAGAACCGAAGTAAATTTCAAAGCTTGTACGAATCTGTGAACTCTCTTTCGACAGTAGATGCACTTAGGCTATTCAATGACGATATTACGGCACAACGCACGAAA
GAAGAGCGTGTCAATGCAAATACAAATTCCCAATCAAAGGATTTGTTAAAGAAAAATTCAGATTATGGTCGTCTAAGAAAGTTCTATGGAGAGCTTGAAGCACTTTTACA
CAAATCACCTGCTCTGAATGTTCATTTACACGAAGAACAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACCTTCCCGTGTGTCTAAGCTTTCTTTGAGCAAAATTGGGGCTATAATTGGATACCGCGATGGCTTAATTGCTGGGAAAGAAGCTGCAGCTCAAGAGGGATTTAA
TGTTGGCTTCAAGCAGTCAGTCTCTGTCGGATATAAATTGGGTCTTGTCAGAGGTGTTAGCAGTGTGCTTGCTTCCTTTCCTGATGACGTGAAAGAGAAGCTTGCAGGAA
TTGAAGAGAACCGAAGTAAATTTCAAAGCTTGTACGAATCTGTGAACTCTCTTTCGACAGTAGATGCACTTAGGCTATTCAATGACGATATTACGGCACAACGCACGAAA
GAAGAGCGTGTCAATGCAAATACAAATTCCCAATCAAAGGATTTGTTAAAGAAAAATTCAGATTATGGTCGTCTAAGAAAGTTCTATGGAGAGCTTGAAGCACTTTTACA
CAAATCACCTGCTCTGAATGTTCATTTACACGAAGAACAGTAGATTTTGCTGTAACTTATCATCAATGCAACTTCTGTAGGTTCAGCATTTGTTTTCTTTAAATTTTAGG
TCTTGACCTTGTCTGTACTTGTTGCAGTTATGTAAATATTTATAAATGGAAATTGACATATCATCCTTTAAACTTGTAATGTATTTGTTTGGCAAACAACAGATGAACAG
AAACATGGGGAATCCCTTGTAATGATTCTTAGAATATTTCTTTACCAGAGAGCATTTTCCACTGGTGTGTGAATGGTTGATGTCCCTTGTCTGGAGC
Protein sequenceShow/hide protein sequence
MEPSRVSKLSLSKIGAIIGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTK
EERVNANTNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ