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Lsi04G000860 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G000860
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr04:1032983..1033378
RNA-Seq ExpressionLsi04G000860
SyntenyLsi04G000860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648853.1 hypothetical protein Csa_008932 [Cucumis sativus]3.7e-2164.66Show/hide
Query:  MALRHASLIFFFFL-FALAFSSTIMATSRAMFDITPSPTTSTEAPIPTIDAKLS-PPTSFEAMFVARSGSSI--SMTPSIGEFVAFEVPSGIG-ANPPMP
        MALRHA L+FFF L  ALA SST MATSRAM  I P+         PTIDAK S PPT  EA  VA  GSS+  SM PS G+FVAFEVPS +  ANPPMP
Subjt:  MALRHASLIFFFFL-FALAFSSTIMATSRAMFDITPSPTTSTEAPIPTIDAKLS-PPTSFEAMFVARSGSSI--SMTPSIGEFVAFEVPSGIG-ANPPMP

Query:  NWIIRSCKPKGRMRYS
        +W+IRSCKPKGRMR S
Subjt:  NWIIRSCKPKGRMRYS

KAE8649707.1 hypothetical protein Csa_012825 [Cucumis sativus]6.1e-0836.92Show/hide
Query:  MALRHASLIF-FFFLFALAFSSTIMATSRAMFDITPSPTTSTEAPIPTIDAKLSPPTSFEAMFVARSGSSISMTPSIGEFVAFEVPSGIGANPPMPNWII
        MA +H  + F FFFL A++  S I+AT+R M D+   PTT  E+ I      ++         V  S SSIS+ P+  EF++F+ P+G+GA  P+P  ++
Subjt:  MALRHASLIF-FFFLFALAFSSTIMATSRAMFDITPSPTTSTEAPIPTIDAKLSPPTSFEAMFVARSGSSISMTPSIGEFVAFEVPSGIGANPPMPNWII

Query:  RSCKPKGRMRYSAPSDRRNSEPL-LSIVCS
          CKPKG + +SAP+ + N   + +S +C+
Subjt:  RSCKPKGRMRYSAPSDRRNSEPL-LSIVCS

KAE8649709.1 hypothetical protein Csa_012565, partial [Cucumis sativus]3.6e-0839.5Show/hide
Query:  MALRHASLIF-FFFLFALAFSSTIMATSRAMFDITPSPTTSTEAPIPTIDAKLSPPTSFEAMFVARSGSSISMTPSIGEFVAFEVPSGIGANPPMPNWII
        MA +H  + F FFFL A++  S IMAT+R M D+   PTT  E+ I      ++         V  S SSIS+ P+  EF++F+ P+G+GA  P+P  ++
Subjt:  MALRHASLIF-FFFLFALAFSSTIMATSRAMFDITPSPTTSTEAPIPTIDAKLSPPTSFEAMFVARSGSSISMTPSIGEFVAFEVPSGIGANPPMPNWII

Query:  RSCKPKGRMRYSAPSDRRN
          CKPKG + +SAP+ + N
Subjt:  RSCKPKGRMRYSAPSDRRN

KAG6573847.1 hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sororia]6.8e-2360.95Show/hide
Query:  SRAMFDITPSPTTSTEAPIPTIDAKLSPPTSFEAMFVARSGSSISMTPSIGEFVAFEVPSGIGANPPMPNWIIRSCKPKGRMRYSAPSDRRNSEPLLSIV
        S   F + P+P+TST     T D + S P+++EA  V  SGS+I M+P+  +FVAFEVP+G+ A PPM N +IRSCKPKGRMRYSAPSDRRNS PL+SIV
Subjt:  SRAMFDITPSPTTSTEAPIPTIDAKLSPPTSFEAMFVARSGSSISMTPSIGEFVAFEVPSGIGANPPMPNWIIRSCKPKGRMRYSAPSDRRNSEPLLSIV

Query:  CSNMS
        CSNMS
Subjt:  CSNMS

TYK09256.1 hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa]7.7e-3566.67Show/hide
Query:  MALRHASLIFFFFL-FALAFSSTIMATSRAMFDITPSPTTSTEAPIPTIDAK---LSPPTSFEAMFVARSGSSISMTPSIGEFVAFEVPSGIGANPPMPN
        MAL  A L+FF FL  ALA SST MATSRAM  I P+PT ST+AP   +DAK    SPP S   +      SS SM PS G+FVAFEVPS + ANPP P+
Subjt:  MALRHASLIFFFFL-FALAFSSTIMATSRAMFDITPSPTTSTEAPIPTIDAK---LSPPTSFEAMFVARSGSSISMTPSIGEFVAFEVPSGIGANPPMPN

Query:  WIIRSCKPKGRMRYSAPSDRRNSEPLLSIVCSNMS
        W+IRSCKPKGRMRYSAPSDRRNSEPL+SIVCSNMS
Subjt:  WIIRSCKPKGRMRYSAPSDRRNSEPLLSIVCSNMS

TrEMBL top hitse value%identityAlignment
A0A0A0KRI3 Uncharacterized protein9.8e-2869.64Show/hide
Query:  MATSRAMFDITPSPTTSTEAPIPTIDAKLS-PPTSFEAMFVARSGSSI--SMTPSIGEFVAFEVPSGIG-ANPPMPNWIIRSCKPKGRMRYSAPSDRRNS
        MATSRAM  I P+         PTIDAK S PPT  EA  VA  GSS+  SM PS G+FVAFEVPS +  ANPPMP+W+IRSCKPKGRMRYSAPSDRRNS
Subjt:  MATSRAMFDITPSPTTSTEAPIPTIDAKLS-PPTSFEAMFVARSGSSI--SMTPSIGEFVAFEVPSGIG-ANPPMPNWIIRSCKPKGRMRYSAPSDRRNS

Query:  EPLLSIVCSNMS
        EPL+SIVCSNMS
Subjt:  EPLLSIVCSNMS

A0A5D3CFX3 Uncharacterized protein3.7e-3566.67Show/hide
Query:  MALRHASLIFFFFL-FALAFSSTIMATSRAMFDITPSPTTSTEAPIPTIDAK---LSPPTSFEAMFVARSGSSISMTPSIGEFVAFEVPSGIGANPPMPN
        MAL  A L+FF FL  ALA SST MATSRAM  I P+PT ST+AP   +DAK    SPP S   +      SS SM PS G+FVAFEVPS + ANPP P+
Subjt:  MALRHASLIFFFFL-FALAFSSTIMATSRAMFDITPSPTTSTEAPIPTIDAK---LSPPTSFEAMFVARSGSSISMTPSIGEFVAFEVPSGIGANPPMPN

Query:  WIIRSCKPKGRMRYSAPSDRRNSEPLLSIVCSNMS
        W+IRSCKPKGRMRYSAPSDRRNSEPL+SIVCSNMS
Subjt:  WIIRSCKPKGRMRYSAPSDRRNSEPLLSIVCSNMS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTACGACATGCTTCTCTCATCTTCTTCTTTTTCCTTTTTGCTTTGGCCTTTTCTTCTACTATTATGGCAACGTCTAGAGCCATGTTCGATATAACGCCTTCTCC
AACCACGTCTACTGAAGCACCTATTCCGACAATTGACGCAAAACTTTCACCACCAACGTCGTTTGAAGCTATGTTCGTTGCGAGATCTGGTTCCTCAATTTCTATGACTC
CGAGTATTGGTGAGTTTGTTGCTTTTGAAGTTCCTAGTGGAATTGGAGCAAATCCACCAATGCCCAATTGGATCATCCGAAGTTGTAAGCCTAAAGGTCGAATGAGGTAT
TCTGCTCCCAGCGATCGCAGGAATAGTGAACCACTTCTCTCAATTGTCTGCTCAAACATGTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTACGACATGCTTCTCTCATCTTCTTCTTTTTCCTTTTTGCTTTGGCCTTTTCTTCTACTATTATGGCAACGTCTAGAGCCATGTTCGATATAACGCCTTCTCC
AACCACGTCTACTGAAGCACCTATTCCGACAATTGACGCAAAACTTTCACCACCAACGTCGTTTGAAGCTATGTTCGTTGCGAGATCTGGTTCCTCAATTTCTATGACTC
CGAGTATTGGTGAGTTTGTTGCTTTTGAAGTTCCTAGTGGAATTGGAGCAAATCCACCAATGCCCAATTGGATCATCCGAAGTTGTAAGCCTAAAGGTCGAATGAGGTAT
TCTGCTCCCAGCGATCGCAGGAATAGTGAACCACTTCTCTCAATTGTCTGCTCAAACATGTCATGA
Protein sequenceShow/hide protein sequence
MALRHASLIFFFFLFALAFSSTIMATSRAMFDITPSPTTSTEAPIPTIDAKLSPPTSFEAMFVARSGSSISMTPSIGEFVAFEVPSGIGANPPMPNWIIRSCKPKGRMRY
SAPSDRRNSEPLLSIVCSNMS