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Lsi04G001010 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G001010
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPectate lyase
Genome locationchr04:1150984..1152418
RNA-Seq ExpressionLsi04G001010
SyntenyLsi04G001010
Gene Ontology termsGO:0045490 - pectin catabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030570 - pectate lyase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008446817.1 PREDICTED: probable pectate lyase 18 [Cucumis melo]9.4e-2071.76Show/hide
Query:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGG-----NGNDDYYGMIFKAAGYSVLPILPSIN-LCTQILI-LLYIVTNYSGLFAL
        GFSGGNGGNGDEGYGGNTVINNSPIYENGGG     NGNDDY+GMIFKA G  + PI  S+N LCT ++I L+YIV  YS LF+L
Subjt:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGG-----NGNDDYYGMIFKAAGYSVLPILPSIN-LCTQILI-LLYIVTNYSGLFAL

XP_011655861.1 probable pectate lyase 18 [Cucumis sativus]3.6e-1973.17Show/hide
Query:  GFSGGNGGNGDEGYGGNTVINNSPIYENGG-------GNGNDDYYGMIFKAAGYSVLPILPSIN-LCTQILI-LLYIVTNYS
        GFSGG+GGNGDEGYGGNTVINNSPIYENGG       GNGNDDY+GMIFKA G+   PI  S+N LCT ++I LLYIVTNYS
Subjt:  GFSGGNGGNGDEGYGGNTVINNSPIYENGG-------GNGNDDYYGMIFKAAGYSVLPILPSIN-LCTQILI-LLYIVTNYS

XP_022138994.1 probable pectate lyase 18 [Momordica charantia]5.9e-1468.35Show/hide
Query:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPILP-SINLCTQILILLYIVTNYSGLFAL
        GFSG N G+G   YGGNTVINNSPI  NGGG G DD+YGMIFKA GY V  + P SINL  QI+I+LYIV NY GLF L
Subjt:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPILP-SINLCTQILILLYIVTNYSGLFAL

XP_022956421.1 probable pectate lyase 18 [Cucurbita moschata]1.5e-1263.29Show/hide
Query:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPI-LPSINLCTQILILLYIVTNYSGLFAL
        GF+G N G+GD G GGNT I+NSPIY NGGG+ ND+YYGM+FK  GY    +   S NLC QI+I+LYIVTNYSGL  L
Subjt:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPI-LPSINLCTQILILLYIVTNYSGLFAL

XP_038893100.1 probable pectate lyase 18 isoform X1 [Benincasa hispida]2.5e-2887.18Show/hide
Query:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPILPSINLCTQILILLYIVTNYSGLFAL
        GF+G NGGNGDEGYGGNTVINNSPIYENGG NGNDDYYGMIFKA G+ VLP+LPSINLCTQI+ILLYIVTNYSGLF +
Subjt:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPILPSINLCTQILILLYIVTNYSGLFAL

TrEMBL top hitse value%identityAlignment
A0A0A0KRG9 Pectate lyase1.7e-1973.17Show/hide
Query:  GFSGGNGGNGDEGYGGNTVINNSPIYENGG-------GNGNDDYYGMIFKAAGYSVLPILPSIN-LCTQILI-LLYIVTNYS
        GFSGG+GGNGDEGYGGNTVINNSPIYENGG       GNGNDDY+GMIFKA G+   PI  S+N LCT ++I LLYIVTNYS
Subjt:  GFSGGNGGNGDEGYGGNTVINNSPIYENGG-------GNGNDDYYGMIFKAAGYSVLPILPSIN-LCTQILI-LLYIVTNYS

A0A1S3BGT0 Pectate lyase4.6e-2071.76Show/hide
Query:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGG-----NGNDDYYGMIFKAAGYSVLPILPSIN-LCTQILI-LLYIVTNYSGLFAL
        GFSGGNGGNGDEGYGGNTVINNSPIYENGGG     NGNDDY+GMIFKA G  + PI  S+N LCT ++I L+YIV  YS LF+L
Subjt:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGG-----NGNDDYYGMIFKAAGYSVLPILPSIN-LCTQILI-LLYIVTNYSGLFAL

A0A6J1CBN1 Pectate lyase2.9e-1468.35Show/hide
Query:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPILP-SINLCTQILILLYIVTNYSGLFAL
        GFSG N G+G   YGGNTVINNSPI  NGGG G DD+YGMIFKA GY V  + P SINL  QI+I+LYIV NY GLF L
Subjt:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPILP-SINLCTQILILLYIVTNYSGLFAL

A0A6J1GWH9 Pectate lyase7.0e-1363.29Show/hide
Query:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPI-LPSINLCTQILILLYIVTNYSGLFAL
        GF+G N G+GD G GGNT I+NSPIY NGGG+ ND+YYGM+FK  GY    +   S NLC QI+I+LYIVTNYSGL  L
Subjt:  GFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPI-LPSINLCTQILILLYIVTNYSGLFAL

A0A6J1ISI7 Pectate lyase4.6e-1260.24Show/hide
Query:  GFSGGNGGNG-----DEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPILPSINLCTQILILLYIVTNYSGLFAL
        GF+G NG NG     D GYGGNT INN+PIY NGGGN +DDY+ MIFK  GY    +  S NL  QI+I+LYIV NYS LF L
Subjt:  GFSGGNGGNG-----DEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPILPSINLCTQILILLYIVTNYSGLFAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTTAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGCAATGGTAATGATGA
CTACTACGGCATGATATTTAAAGCGGCTGGTTATAGTGTATTGCCGATATTGCCCTCCATAAACTTATGTACTCAAATTCTAATACTTTTGTACATAGTCACAAATTATA
GTGGTCTATTCGCATTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATTTAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGCAATGGTAATGATGA
CTACTACGGCATGATATTTAAAGCGGCTGGTTATAGTGTATTGCCGATATTGCCCTCCATAAACTTATGTACTCAAATTCTAATACTTTTGTACATAGTCACAAATTATA
GTGGTCTATTCGCATTATAG
Protein sequenceShow/hide protein sequence
MGFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPILPSINLCTQILILLYIVTNYSGLFAL