CuGenDBv2

Gene ID	Lsi04G001170
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	chr04:1280317..1280613
RNA-Seq Expression	Lsi04G001170
Synteny	Lsi04G001170
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AQT03138.1 photosystem II CP43-chlorophyll, partial [Poliothyrsis sinensis]

4.4e-35

86.02

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE-CLQPLGHLS
        MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE  L  L HLS
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE-CLQPLGHLS

TYG57477.1 hypothetical protein ES288_D08G144700v1 [Gossypium darwinii]

4.4e-35

90.36

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE
        MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE

YP_009432384.1 photosystem II CP43 chlorophyll apoprotein [Xanthorrhoea preissii]

1.5e-35

91.57

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE
        MKTLYSLRRFYPVEMLFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE

YP_009474053.1 photosystem II CP43 chlorophyll apoprotein [Poliothyrsis sinensis]

4.4e-35

86.02

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE-CLQPLGHLS
        MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE  L  L HLS
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE-CLQPLGHLS

YP_010119021.1 photosystem II 44 kDa protein [Gymnotheca chinensis]

1.5e-35

91.57

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE
        MKTLYSLRRFYPVEMLFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE

TrEMBL top hits

e value

%identity

Alignment

A0A1S6KIY4 Photosystem II CP43 reaction center protein (Fragment)

2.1e-35

86.02

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE-CLQPLGHLS
        MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE  L  L HLS
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE-CLQPLGHLS

A0A290DMH9 Photosystem II CP43 reaction center protein

7.3e-36

91.57

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE
        MKTLYSLRRFYPVEMLFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE

A0A2P1CRS8 Photosystem II CP43 reaction center protein

2.1e-35

86.02

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE-CLQPLGHLS
        MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE  L  L HLS
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE-CLQPLGHLS

A0A5D2BJX6 Uncharacterized protein

2.1e-35

90.36

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE
        MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE

A0A7U1GFV1 Photosystem II 44 kDa protein

7.3e-36

91.57

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE
        MKTLYSLRRFYPVEMLFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE

SwissProt top hits

e value

%identity

Alignment

A6MM32 Photosystem II CP43 reaction center protein

9.9e-38

90.36

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE
        MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE

A9LYI1 Photosystem II CP43 reaction center protein

9.9e-38

90.36

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE
        MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE

Q3V538 Photosystem II CP43 reaction center protein

9.9e-38

90.36

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE
        MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE

Q70Y07 Photosystem II CP43 reaction center protein

9.9e-38

90.36

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE
        MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE

Q7YJX6 Photosystem II CP43 reaction center protein

9.9e-38

90.36

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Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE
        MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

7.8e-38

89.16

Show/hide

Query:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE
        MKTLYSLRRFY VE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLIVFW GAMNLFEVAHFVPEK MYE
Subjt:  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYE

Sequences

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CDS sequence

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ATGAAAACCTTATATTCCCTGAGGAGATTCTACCCCGTGGAAATGCTCTTTAATGGAACGTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCAGGTTCGCTTGGTGGGT
CGGGAATGTCCGACTTATCAATTTATCTAGTAAACTACTCGAGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGATCGGAGCAATGAACCTATTCGAAGTGGCTC
ATTTCGTACCGGAGAAGTCCATGTATGAATGCCTTCAACCACTCGGCCATCTCTCCTACAGAATGATTATGGCCTAG

mRNA sequence

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Protein sequence

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MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYECLQPLGHLSYRMIMA

Lsi04G001170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome