CuGenDBv2

Gene ID	Lsi04G001300
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	transcriptional activator DEMETER-like
Genome location	chr04:1497209..1497705
RNA-Seq Expression	Lsi04G001300
Synteny	Lsi04G001300
Gene Ontology terms	GO:0006284 - base-excision repair (biological process) GO:0006306 - DNA methylation (biological process) GO:0006349 - regulation of gene expression by genetic imprinting (biological process) GO:0009793 - embryo development ending in seed dormancy (biological process) GO:0080111 - DNA demethylation (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0043078 - polar nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity (molecular function) GO:0016829 - lyase activity (molecular function) GO:0019104 - DNA N-glycosylase activity (molecular function) GO:0035514 - DNA demethylase activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR028925 - Demeter, RRM-fold domain IPR044811 - DNA glycosylase, plant

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008446781.1 PREDICTED: transcriptional activator DEMETER isoform X1 [Cucumis melo]

2.3e-21

92.31

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        MFADH+SS+ PIDVPR WLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

XP_011655842.1 protein ROS1A isoform X1 [Cucumis sativus]

2.3e-21

92.31

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        MFADH+SS+ PIDVPR WLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

XP_022139022.1 transcriptional activator DEMETER isoform X1 [Momordica charantia]

8.0e-22

94.23

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        MFADH SS+ PIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

XP_022139024.1 transcriptional activator DEMETER isoform X2 [Momordica charantia]

8.0e-22

94.23

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        MFADH SS+ PIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

XP_038893266.1 transcriptional activator DEMETER-like isoform X1 [Benincasa hispida]

4.2e-23

98.08

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        MFADH+SSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTG6 ENDO3c domain-containing protein

1.1e-21

92.31

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        MFADH+SS+ PIDVPR WLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

A0A1S3BGJ5 transcriptional activator DEMETER isoform X1

1.1e-21

92.31

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        MFADH+SS+ PIDVPR WLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

A0A6J1CBR3 transcriptional activator DEMETER isoform X2

3.9e-22

94.23

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        MFADH SS+ PIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

A0A6J1CCU9 transcriptional activator DEMETER isoform X1

3.9e-22

94.23

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        MFADH SS+ PIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

A0A6J1KCN5 transcriptional activator DEMETER-like isoform X1

3.3e-21

90.38

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        MFADH+SS+ PIDVPR WLWNLPRRTVYFGTSVS+IFKGLVTEEIQQCFWRG
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

SwissProt top hits

e value

%identity

Alignment

B8YIE8 Protein ROS1C

3.3e-18

76.92

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        +FADH SS NPI++PR  LWNL RR VYFGTSV TIFKGL TEEIQ CFWRG
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

C7IW64 Protein ROS1A

6.4e-22

82.69

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        +FADH SS NPIDVPR+W+WNLPRRTVYFGTS+ TIFKGL TEEIQ CFWRG
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

Q8LK56 Transcriptional activator DEMETER

7.8e-20

73.08

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        +FADH+SS+ PIDVPR+W+W+LPRRTVYFGTSV++IF+GL TE+IQ CFW+G
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

Q9SJQ6 DNA glycosylase/AP lyase ROS1

1.9e-18

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        +FADH SS+NPI+VPR  +W LPRRTVYFGTSV TIFKGL TE+IQ CFW+G
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

Q9SR66 DEMETER-like protein 2

1.9e-10

57.69

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        +FADH SSINPIDVP   +W+L RR  Y G+SVS+I KGL  E I+  F  G
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

Arabidopsis top hits

e value

%identity

Alignment

AT2G36490.1 demeter-like 1

1.4e-19

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        +FADH SS+NPI+VPR  +W LPRRTVYFGTSV TIFKGL TE+IQ CFW+G
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

AT3G10010.1 demeter-like 2

1.4e-11

57.69

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        +FADH SSINPIDVP   +W+L RR  Y G+SVS+I KGL  E I+  F  G
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

AT4G04957.1 Domain of unknown function (DUF1985)

2.5e-13

65.96

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQ
        MFADH SS+NPIDVPR  +W+LPRRTV+FGTS+ TIFK      IQ+
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQ

AT5G04560.1 HhH-GPD base excision DNA repair family protein

5.5e-21

73.08

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        +FADH+SS+ PIDVPR+W+W+LPRRTVYFGTSV++IF+GL TE+IQ CFW+G
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

AT5G04560.2 HhH-GPD base excision DNA repair family protein

5.5e-21

73.08

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Query:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG
        +FADH+SS+ PIDVPR+W+W+LPRRTVYFGTSV++IF+GL TE+IQ CFW+G
Subjt:  MFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG

Sequences

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CDS sequence

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mRNA sequence

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ATGATAATGTTTGCAGATCATCAATCTAGTATAAATCCCATTGATGTTCCAAGAAATTGGTTATGGAACTTACCTAGACGAACAGTCTACTTCGGAACATCAGTATCAAC
AATATTCAAGGGCCTTGTGACGGAGGAGATTCAGCAATGCTTTTGGAGAGGTACGTTAACGTATTCCCTTCATTTACCAAAATTCTTGCATAGTATTCTACGTGTGGTGG
CCATGATTTTTAACCTAGTGACATATTAAAATATAAAATCCACTAAAGTAACTGGGCCCTTTAACTTCAGATAAAAGTTAAGCCATAAAAATGGACAGCCAAATAGCAAA
TTTTTATCCCCATACCCATGCATTGGTCC

Protein sequence

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MIMFADHQSSINPIDVPRNWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRGTLTYSLHLPKFLHSILRVVAMIFNLVTY

Lsi04G001300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome