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Lsi04G001410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G001410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S acidic ribosomal protein P2-like
Genome locationchr04:1602374..1603593
RNA-Seq ExpressionLsi04G001410
SyntenyLsi04G001410
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034662.1 60S acidic ribosomal protein P2-4-like [Cucumis melo var. makuwa]9.8e-3994.44Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MKIVAAYLLAVLGGN+SPSAKDLKDILGSVGAEIDE+RIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAA  GGGGGGAAAPA AE KKEEKV
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

XP_008446770.1 PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo]9.8e-3994.44Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MKIVAAYLLAVLGGN+SPSAKDLKDILGSVGAEIDE+RIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAA  GGGGGGAAAPA AE KKEEKV
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

XP_022957078.1 60S acidic ribosomal protein P2-1-like [Cucurbita moschata]2.2e-3891.67Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MKIVAAYLLAVLGGN+SPSAKDLKDILGSVGAE+DED+IELL+S+VKGKD+TELIASGREKLASVPSGGGAAVAVAAA  GGGGGAAAPAAAE+KKEEKV
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

XP_022984367.1 60S acidic ribosomal protein P2-4-like [Cucurbita maxima]4.9e-3890.74Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MKIVAAYLLAVLGGN+SPSAKDLKDILGSVGAE+DED+IELL+S+VKGKD+TELIASGREKLASVPSGGGAAVAVAA+  GGGGGAAAPAAAE+KKEEKV
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

XP_038891319.1 60S acidic ribosomal protein P2-2-like [Benincasa hispida]4.9e-3894.44Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDE+RIELLLSNVKGKDVTELIASGREKLASVPSGGGA VA AAA GGGGGGA APAAAE+KKEEKV
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

TrEMBL top hitse value%identityAlignment
A0A0A0KRE0 Uncharacterized protein3.1e-3891.67Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MKIVAAYLLAVLGGNS+PSAKDLKDILGSVGAE+DE+RI LLLSNVKGKD+TELIASGREKLASVPSGGGAAVAVAA  GGGGGGAAAPA AE KKEEKV
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

A0A1S3BFW0 60S acidic ribosomal protein P2-4-like4.8e-3994.44Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MKIVAAYLLAVLGGN+SPSAKDLKDILGSVGAEIDE+RIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAA  GGGGGGAAAPA AE KKEEKV
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

A0A5D3CBJ1 60S acidic ribosomal protein P2-4-like4.8e-3994.44Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MKIVAAYLLAVLGGN+SPSAKDLKDILGSVGAEIDE+RIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAA  GGGGGGAAAPA AE KKEEKV
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

A0A6J1GZ75 60S acidic ribosomal protein P2-1-like1.1e-3891.67Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MKIVAAYLLAVLGGN+SPSAKDLKDILGSVGAE+DED+IELL+S+VKGKD+TELIASGREKLASVPSGGGAAVAVAAA  GGGGGAAAPAAAE+KKEEKV
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

A0A6J1J1Z8 60S acidic ribosomal protein P2-4-like2.4e-3890.74Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MKIVAAYLLAVLGGN+SPSAKDLKDILGSVGAE+DED+IELL+S+VKGKD+TELIASGREKLASVPSGGGAAVAVAA+  GGGGGAAAPAAAE+KKEEKV
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

SwissProt top hitse value%identityAlignment
P41099 60S acidic ribosomal protein P25.6e-2971.03Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MK++AA+LLA+LGGN+SP+ +DLK IL SVGA+ D+D+IELLLS VKGKD+TELIASGRE+LASVPSGGG  VAVAAA GGGGG A A AA E KKEEK 
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESD
        EE+ + +
Subjt:  EEKEESD

P46252 60S acidic ribosomal protein P2A5.8e-2672.22Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MK VAAYLLAVL GN+SPSA DL  IL SVG E+D +++ELLLS + GKD+TELIA+GREK ASVP GGG  VAVAAA    GG  AAP AAE KKEEKV
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

P51407 60S acidic ribosomal protein P2-15.1e-3073.15Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MK+VAA+LLAVL G +SP+  D+KDILGSVGAE ++ +IELLL  VKGKD+ ELIA+GREKLASVPSGGG  VAVA+A  GGGGG  AP AAE+KKEEK 
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

Q9LXM8 60S acidic ribosomal protein P2-41.4e-2770.37Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MK+ AA+LLAVLGGN++PSA ++KDI+G+VGA++D + IELLL  V GKD+ ELIASGREKLASVPSGGG  VAV+AA   GGGGAAAPA    KKE K 
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

Q9SLF7 60S acidic ribosomal protein P2-24.3e-2972.22Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MK+VAAYLLAVL G +SP++ D+K ILGSVGAE ++ +IELLL  VKGKD+ ELIA+GREKLASVPSGGG  VAVA+A  GGGGG  A +AAE+KKEEK 
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family3.1e-3072.22Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MK+VAAYLLAVL G +SP++ D+K ILGSVGAE ++ +IELLL  VKGKD+ ELIA+GREKLASVPSGGG  VAVA+A  GGGGG  A +AAE+KKEEK 
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

AT2G27710.2 60S acidic ribosomal protein family3.1e-3072.22Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MK+VAAYLLAVL G +SP++ D+K ILGSVGAE ++ +IELLL  VKGKD+ ELIA+GREKLASVPSGGG  VAVA+A  GGGGG  A +AAE+KKEEK 
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

AT2G27710.3 60S acidic ribosomal protein family3.1e-3072.22Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MK+VAAYLLAVL G +SP++ D+K ILGSVGAE ++ +IELLL  VKGKD+ ELIA+GREKLASVPSGGG  VAVA+A  GGGGG  A +AAE+KKEEK 
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

AT2G27720.1 60S acidic ribosomal protein family3.6e-3173.15Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MK+VAA+LLAVL G +SP+  D+KDILGSVGAE ++ +IELLL  VKGKD+ ELIA+GREKLASVPSGGG  VAVA+A  GGGGG  AP AAE+KKEEK 
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD

AT3G44590.2 60S acidic ribosomal protein family9.8e-2970.37Show/hide
Query:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV
        MK+ AA+LLAVLGGN++PSA ++KDI+G+VGA++D + IELLL  V GKD+ ELIASGREKLASVPSGGG  VAV+AA   GGGGAAAPA    KKE K 
Subjt:  MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKV

Query:  EEKEESDD
        EEKEESDD
Subjt:  EEKEESDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCAAACGATGAAGATCGTTGCTGCTTATTTGCTCGCCGTTTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAGGATATTCTCGGATCTGTTGGAGCTGA
AATTGATGAGGACAGAATCGAGCTTCTGCTGTCTAATGTTAAGGGTAAGGACGTTACAGAGCTCATTGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAG
GTGCTGCTGTGGCAGTTGCTGCTGCAGGAGGTGGTGGCGGTGGTGGTGCCGCTGCCCCTGCTGCAGCTGAGACGAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCA
GACGAT
mRNA sequenceShow/hide mRNA sequence
ATGGGCCAAACGATGAAGATCGTTGCTGCTTATTTGCTCGCCGTTTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAGGATATTCTCGGATCTGTTGGAGCTGA
AATTGATGAGGACAGAATCGAGCTTCTGCTGTCTAATGTTAAGGGTAAGGACGTTACAGAGCTCATTGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAG
GTGCTGCTGTGGCAGTTGCTGCTGCAGGAGGTGGTGGCGGTGGTGGTGCCGCTGCCCCTGCTGCAGCTGAGACGAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCA
GACGAT
Protein sequenceShow/hide protein sequence
MGQTMKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEDRIELLLSNVKGKDVTELIASGREKLASVPSGGGAAVAVAAAGGGGGGGAAAPAAAETKKEEKVEEKEES
DD