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Lsi04G001460 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G001460
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionR3H domain-containing protein 2-like
Genome locationchr04:1672781..1673761
RNA-Seq ExpressionLsi04G001460
SyntenyLsi04G001460
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034658.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa]3.1e-3894.85Show/hide
Query:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
        MEGS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLD  VADAAPAYHFSSASFPSLSASASS LDRVSEDAINQVDQFLREALHNPRERLS
Subjt:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
KAG6601215.1 R3H domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia]9.5e-3585.57Show/hide
Query:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
        MEGS VEDLGAPESWEVA+LDEAMSRLMLPSSSP KNSKSLD+S  DAAPA HFSSASFPSL +SASST+DRV ED +NQVDQFL EALHNPRERLS
Subjt:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
KAG7032009.1 R3H domain-containing protein 2 [Cucurbita argyrosperma subsp. argyrosperma]5.6e-3585.57Show/hide
Query:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
        MEGS VEDLGAPESWEVA+LDEAMSRLMLPSSSP KNSKSLD+S+ DAAPA HFSSASFPSL +SASST+DRV ED +NQVDQFL EALHNPRERLS
Subjt:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
XP_008446764.1 PREDICTED: R3H domain-containing protein 2-like [Cucumis melo]3.1e-3894.85Show/hide
Query:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
        MEGS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLD  VADAAPAYHFSSASFPSLSASASS LDRVSEDAINQVDQFLREALHNPRERLS
Subjt:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
XP_038892280.1 uncharacterized protein LOC120081466 [Benincasa hispida]5.2e-4196.91Show/hide
Query:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
        MEGS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLDHSVADAAPAYHFSSASFPSLSAS SSTLDRVSEDAINQVDQFLREALHNPRERLS
Subjt:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
TrEMBL top hitse value%identityAlignment
A0A1S3BGI0 R3H domain-containing protein 2-like1.5e-3894.85Show/hide
Query:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
        MEGS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLD  VADAAPAYHFSSASFPSLSASASS LDRVSEDAINQVDQFLREALHNPRERLS
Subjt:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
A0A5D3CFX4 R3H domain-containing protein 2-like1.5e-3894.85Show/hide
Query:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
        MEGS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLD  VADAAPAYHFSSASFPSLSASASS LDRVSEDAINQVDQFLREALHNPRERLS
Subjt:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
A0A6J1G0Z8 R3H domain-containing protein 1-like1.3e-3487.63Show/hide
Query:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
        M+GS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLDHSVADAA   H SSASFPS SAS SST DR SED INQVDQFLREALHNPRERLS
Subjt:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
A0A6J1GZL4 R3H domain-containing protein 2-like3.0e-3484.54Show/hide
Query:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
        MEGS VEDLGAPESWEVA+LDEAMSRLMLPSSSP KNSKSLD+S  DAAPA HFSSASFPSL +SASST+DRV ED +NQVDQFL EAL+NPRERLS
Subjt:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
A0A6J1HWM6 R3H domain-containing protein 1-like1.3e-3487.63Show/hide
Query:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
        M+GS VEDLGAPESWEVADLDEAMSRLMLPSSSP KNSKSLDHSVADAA   H SSASFPS SAS SST DR SED INQVDQFLREALHNPRERLS
Subjt:  MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGCTCTGTGGTTGAGGATCTCGGAGCACCGGAGTCATGGGAGGTCGCCGATTTGGACGAGGCCATGAGCCGATTGATGCTCCCCTCTTCATCTCCTAACAAGAA
TTCCAAATCCTTGGACCACTCTGTTGCCGATGCTGCTCCTGCTTATCATTTTTCATCCGCTTCCTTTCCCTCTCTTTCTGCTTCGGCTTCTTCTACTCTCGATAGGGTTT
CCGAGGATGCTATCAATCAGGTTGATCAGTTCCTTCGTGAGGCTTTGCATAACCCTCGGGAGCGTCTATCAAGAATTCTCGAATGTCACGTTCGGTACGAGGGAGGAGAT
AGTAAAAAGTTGCTTGCTACGGCCTTCTCCAAGCTGGGTTGGAAGTGGCCGGACTTAAATGCTGGGTTGGAAAATGAATGCAAGACGAAGTTTAGAAGACGGAGAAGAAA
GGGGATTTTTGTTGCTATTGGATGTTCTGAATACTCAAAGAGC
mRNA sequenceShow/hide mRNA sequence
GACTTTAGAGTTCTCCTCCCTTCGTCTCCCCATGGAGGGCTCTGTGGTTGAGGATCTCGGAGCACCGGAGTCATGGGAGGTCGCCGATTTGGACGAGGCCATGAGCCGAT
TGATGCTCCCCTCTTCATCTCCTAACAAGAATTCCAAATCCTTGGACCACTCTGTTGCCGATGCTGCTCCTGCTTATCATTTTTCATCCGCTTCCTTTCCCTCTCTTTCT
GCTTCGGCTTCTTCTACTCTCGATAGGGTTTCCGAGGATGCTATCAATCAGGTTGATCAGTTCCTTCGTGAGGCTTTGCATAACCCTCGGGAGCGTCTATCAAGAATTCT
CGAATGTCACGTTCGGTACGAGGGAGGAGATAGTAAAAAGTTGCTTGCTACGGCCTTCTCCAAGCTGGGTTGGAAGTGGCCGGACTTAAATGCTGGGTTGGAAAATGAAT
GCAAGACGAAGTTTAGAAGACGGAGAAGAAAGGGGATTTTTGTTGCTATTGGATGTTCTGAATACTCAAAGAGC
Protein sequenceShow/hide protein sequence
MEGSVVEDLGAPESWEVADLDEAMSRLMLPSSSPNKNSKSLDHSVADAAPAYHFSSASFPSLSASASSTLDRVSEDAINQVDQFLREALHNPRERLSRILECHVRYEGGD
SKKLLATAFSKLGWKWPDLNAGLENECKTKFRRRRRKGIFVAIGCSEYSKS