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Lsi04G001540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G001540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionglycine-rich RNA-binding protein GRP1A-like
Genome locationchr04:1739039..1741334
RNA-Seq ExpressionLsi04G001540
SyntenyLsi04G001540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601227.1 hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia]3.7e-3776.38Show/hide
Query:  SAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHT-GGGTAVIPVYAAGSAQAHHRQGRPHN
        S+ALQQQI PTESNY Q+T  EKHGKDGVTN+I   YSA AITVS GI     GHG AA GGGENGGG RP   GGG AVIPVYAAGSAQAHHRQGR  N
Subjt:  SAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHT-GGGTAVIPVYAAGSAQAHHRQGRPHN

Query:  AGNRYENNMGLLVAAVLAAIAHLYRVF
        AGN YENNMGLLVA+VLAAIAHL+ VF
Subjt:  AGNRYENNMGLLVAAVLAAIAHLYRVF

XP_008446752.1 PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo]3.7e-4583.33Show/hide
Query:  MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQ
        +AISSAALQQQIFP  TESNYQQ+TYT K GK GVTNQI RRYSASAITVS+ IRR  A  G AA+GGGENGGG+RPHTGGGTAVIPVYAAGSAQA HRQ
Subjt:  MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQ

Query:  GRPHNAGNRYENNMGLLVAAVLAAIAHLYRVF
        GRPHNAGN YENN GLLVAAVLAAIAHL RV+
Subjt:  GRPHNAGNRYENNMGLLVAAVLAAIAHLYRVF

XP_011655831.2 glycine-rich protein DOT1 [Cucumis sativus]3.1e-4479.58Show/hide
Query:  MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGS---AGHGG-------AASGGGENGGGNRPHTGGGTAVIPVYA
        +AISSAALQQQIFP  TESNYQQ+TYT+KHGK GVTNQI+RRYS+SAITVS+ IRRGS   +G GG       AA+GGGEN GG+RP TGGGTAVIPVYA
Subjt:  MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGS---AGHGG-------AASGGGENGGGNRPHTGGGTAVIPVYA

Query:  AGSAQAHHRQGRPHNAGNRYENNMGLLVAAVLAAIAHLYRVF
        AGSAQAHHRQGR HNAGN YENNMGLLVAAVLAAIAHL RVF
Subjt:  AGSAQAHHRQGRPHNAGNRYENNMGLLVAAVLAAIAHLYRVF

XP_023517064.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]3.7e-3776.38Show/hide
Query:  SAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHT-GGGTAVIPVYAAGSAQAHHRQGRPHN
        S+ALQQQI PTESNY Q+T  EKHGKDGVTN+I   YSA AITVS GI     GHG AA GGGENGGG RP   GGG AVIPVYAAGSAQAHHRQGR  N
Subjt:  SAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHT-GGGTAVIPVYAAGSAQAHHRQGRPHN

Query:  AGNRYENNMGLLVAAVLAAIAHLYRVF
        AGN YENNMGLLVA+VLAAIAHL+ VF
Subjt:  AGNRYENNMGLLVAAVLAAIAHLYRVF

XP_038892711.1 uncharacterized protein LOC120081693 [Benincasa hispida]1.8e-4783.08Show/hide
Query:  MAISSAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQGR
        MAISSAALQQQIFPTESNYQQ+TYTEK  KDG+TNQI RRYSA+ ITVS+GI     G G A +GGGENGGG+RPH GGGTAVIPVYAAGSAQAHHRQGR
Subjt:  MAISSAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQGR

Query:  PHNAGNRYENNMGLLVAAVLAAIAHLYRVF
        PHNAGNR+ENN GLLVAAVLAAIAHLY VF
Subjt:  PHNAGNRYENNMGLLVAAVLAAIAHLYRVF

TrEMBL top hitse value%identityAlignment
A0A0A0KUR6 Uncharacterized protein2.3e-4581.16Show/hide
Query:  MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGG------AASGGGENGGGNRPHTGGGTAVIPVYAAGSA
        +AISSAALQQQIFP  TESNYQQ+TYT+KHGK GVTNQI+RRYS+SAITVS+ IRRGS   GG      AA+GGGEN GG+RP TGGGTAVIPVYAAGSA
Subjt:  MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGG------AASGGGENGGGNRPHTGGGTAVIPVYAAGSA

Query:  QAHHRQGRPHNAGNRYENNMGLLVAAVLAAIAHLYRVF
        QAHHRQGR HNAGN YENNMGLLVAAVLAAIAHL RVF
Subjt:  QAHHRQGRPHNAGNRYENNMGLLVAAVLAAIAHLYRVF

A0A1S3BFU8 uncharacterized protein LOC1034893821.8e-4583.33Show/hide
Query:  MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQ
        +AISSAALQQQIFP  TESNYQQ+TYT K GK GVTNQI RRYSASAITVS+ IRR  A  G AA+GGGENGGG+RPHTGGGTAVIPVYAAGSAQA HRQ
Subjt:  MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQ

Query:  GRPHNAGNRYENNMGLLVAAVLAAIAHLYRVF
        GRPHNAGN YENN GLLVAAVLAAIAHL RV+
Subjt:  GRPHNAGNRYENNMGLLVAAVLAAIAHLYRVF

A0A5A7SUI0 Uncharacterized protein1.8e-4583.33Show/hide
Query:  MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQ
        +AISSAALQQQIFP  TESNYQQ+TYT K GK GVTNQI RRYSASAITVS+ IRR  A  G AA+GGGENGGG+RPHTGGGTAVIPVYAAGSAQA HRQ
Subjt:  MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQ

Query:  GRPHNAGNRYENNMGLLVAAVLAAIAHLYRVF
        GRPHNAGN YENN GLLVAAVLAAIAHL RV+
Subjt:  GRPHNAGNRYENNMGLLVAAVLAAIAHLYRVF

A0A6J1GZ71 glycine-rich RNA-binding protein GRP1A-like5.2e-3775.59Show/hide
Query:  SAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHT-GGGTAVIPVYAAGSAQAHHRQGRPHN
        S+ALQQQI PTESNY Q+T  EKHGKDGVTN+I   YSA AITVS GI     GHG AA GGGENGGG RP   GGG AVIPVYAAGSAQAHHRQGR  N
Subjt:  SAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHT-GGGTAVIPVYAAGSAQAHHRQGRPHN

Query:  AGNRYENNMGLLVAAVLAAIAHLYRVF
        AGN YENNMGLLVA+VLAAI HL+ VF
Subjt:  AGNRYENNMGLLVAAVLAAIAHLYRVF

A0A6J1JB47 uncharacterized protein LOC1114851591.2e-3674.8Show/hide
Query:  SAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHT-GGGTAVIPVYAAGSAQAHHRQGRPHN
        S+A QQQI PTE NY Q+T  EKHG+DGVTN+I   YSA AITVS GI     GHG AA GGGENGGG RP   GGG AVIPVYAAGSAQAHHRQGRP N
Subjt:  SAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHT-GGGTAVIPVYAAGSAQAHHRQGRPHN

Query:  AGNRYENNMGLLVAAVLAAIAHLYRVF
        AGN YENNMGLLVA+VLAAIAHL+ VF
Subjt:  AGNRYENNMGLLVAAVLAAIAHLYRVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATTTCATCTGCTGCTCTCCAACAACAAATCTTCCCAACAGAGTCTAATTACCAACAGAGAACTTACACAGAAAAACATGGCAAAGATGGGGTTACTAACCAGAT
TGACAGAAGATACAGTGCAAGTGCAATCACCGTTTCTAGTGGGATTCGTCGTGGAAGTGCAGGTCATGGAGGTGCAGCCTCCGGCGGTGGAGAAAATGGTGGTGGCAATA
GACCTCATACAGGAGGAGGTACAGCCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACATCACCGCCAAGGTCGACCGCACAATGCAGGAAATCGCTATGAGAAC
AACATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCTCATCTCTATAGAGTTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATTTCATCTGCTGCTCTCCAACAACAAATCTTCCCAACAGAGTCTAATTACCAACAGAGAACTTACACAGAAAAACATGGCAAAGATGGGGTTACTAACCAGAT
TGACAGAAGATACAGTGCAAGTGCAATCACCGTTTCTAGTGGGATTCGTCGTGGAAGTGCAGGTCATGGAGGTGCAGCCTCCGGCGGTGGAGAAAATGGTGGTGGCAATA
GACCTCATACAGGAGGAGGTACAGCCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACATCACCGCCAAGGTCGACCGCACAATGCAGGAAATCGCTATGAGAAC
AACATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCTCATCTCTATAGAGTTTTCTGA
Protein sequenceShow/hide protein sequence
MAISSAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQGRPHNAGNRYEN
NMGLLVAAVLAAIAHLYRVF