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Lsi04G001580 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G001580
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNuclear transport factor 2 (NTF2) family protein
Genome locationchr04:1779629..1782249
RNA-Seq ExpressionLsi04G001580
SyntenyLsi04G001580
Gene Ontology termsNA
InterPro domainsIPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601231.1 Exocyst complex component EXO70A1, partial [Cucurbita argyrosperma subsp. sororia]3.7e-9774.33Show/hide
Query:  PPQNEVVEA---SGSASLPRKLDHSRRTKLVPVIINFFLLRLTQLHIYFIILFSSLYLDQSGKSGKSFYSRLRSLVFLKMPGDGEITADPTIEAYSKEAC
        P QNEVVE    S SAS  RKL+HSRRT L P                                         SL+FLKM GDGEIT DPTIEA SKEAC
Subjt:  PPQNEVVEA---SGSASLPRKLDHSRRTKLVPVIINFFLLRLTQLHIYFIILFSSLYLDQSGKSGKSFYSRLRSLVFLKMPGDGEITADPTIEAYSKEAC

Query:  DSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISPGKHEIIVDNKQHYKFMGRNID
        D K  KRFADDIMPHILNLYGSSATPRDFEIYA DASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY+VKEKLISPGKHEI VDNKQHYKF+GRNID
Subjt:  DSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISPGKHEIIVDNKQHYKFMGRNID

Query:  LESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD
        LESLIKLYV+EGKIVRHEDWWNKKPLLNRETV+LPMVGR+LEMTRRCAMLATHAMM FGKD
Subjt:  LESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD

XP_004135041.1 uncharacterized protein LOC101206496 isoform X2 [Cucumis sativus]4.8e-9793.19Show/hide
Query:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY
        RLRSL+FLKMPG GEITADPTIEA +KEACDSK  KR ADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY
Subjt:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY

Query:  NVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD
        N  E+LISPGKHEI VDNKQHYKF+GRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGR LEMTRRCAMLATHAMMGFGKD
Subjt:  NVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD

XP_008446746.1 PREDICTED: uncharacterized protein LOC103489375 isoform X2 [Cucumis melo]2.0e-9592.15Show/hide
Query:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY
        RLRSL+FLKMPGDGEITADPTIEA +KEACDSK  KR ADDIMPHILNLYGSSATPRDFEIYAPDASF+DPLTRA+GVKEIKSAFYSLSKVFSESRIVEY
Subjt:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY

Query:  NVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD
        + KE+LISPGKHEIIVDNKQHYKF+GRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGR LEMTRR  MLATHAMMGFGKD
Subjt:  NVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD

XP_011655829.1 uncharacterized protein LOC101206496 isoform X1 [Cucumis sativus]7.7e-9589.45Show/hide
Query:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHG--------VKEIKSAFYSLSKVF
        RLRSL+FLKMPG GEITADPTIEA +KEACDSK  KR ADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHG        VKEIKSAFYSLSKVF
Subjt:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHG--------VKEIKSAFYSLSKVF

Query:  SESRIVEYNVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD
        SESRIVEYN  E+LISPGKHEI VDNKQHYKF+GRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGR LEMTRRCAMLATHAMMGFGKD
Subjt:  SESRIVEYNVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD

XP_038892486.1 uncharacterized protein LOC120081562 isoform X2 [Benincasa hispida]3.8e-9491.1Show/hide
Query:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY
        RLRSL+FLKM   GEITADPTIE+ SKE CDSKF K FADDI+PHILNLYGS+ATPRDFEIYAPDASFEDPLTRA+GVKEIKSAFYSLSKVF+ESRIVEY
Subjt:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY

Query:  NVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD
        NVKE+LISPGKHEIIVDNKQHYKFMGRNIDLESLIKL+VVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRC MLATHAMM FGKD
Subjt:  NVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD

TrEMBL top hitse value%identityAlignment
A0A0A0KUR1 Uncharacterized protein2.3e-9793.19Show/hide
Query:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY
        RLRSL+FLKMPG GEITADPTIEA +KEACDSK  KR ADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY
Subjt:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY

Query:  NVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD
        N  E+LISPGKHEI VDNKQHYKF+GRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGR LEMTRRCAMLATHAMMGFGKD
Subjt:  NVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD

A0A1S3BFU1 uncharacterized protein LOC103489375 isoform X29.8e-9692.15Show/hide
Query:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY
        RLRSL+FLKMPGDGEITADPTIEA +KEACDSK  KR ADDIMPHILNLYGSSATPRDFEIYAPDASF+DPLTRA+GVKEIKSAFYSLSKVFSESRIVEY
Subjt:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY

Query:  NVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD
        + KE+LISPGKHEIIVDNKQHYKF+GRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGR LEMTRR  MLATHAMMGFGKD
Subjt:  NVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD

A0A1S4DW20 uncharacterized protein LOC103489375 isoform X11.6e-9388.44Show/hide
Query:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHG--------VKEIKSAFYSLSKVF
        RLRSL+FLKMPGDGEITADPTIEA +KEACDSK  KR ADDIMPHILNLYGSSATPRDFEIYAPDASF+DPLTRA+G        VKEIKSAFYSLSKVF
Subjt:  RLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHG--------VKEIKSAFYSLSKVF

Query:  SESRIVEYNVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD
        SESRIVEY+ KE+LISPGKHEIIVDNKQHYKF+GRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGR LEMTRR  MLATHAMMGFGKD
Subjt:  SESRIVEYNVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD

A0A5D3CB20 Nuclear transport factor 2 family protein3.2e-9192.31Show/hide
Query:  MPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISP
        MPGDGEITADPTIEA +KEACDSK  KR ADDIMPHILNLYGSSATPRDFEIYAPDASF+DPLTRA+GVKEIKSAFYSLSKVFSESRIVEY+ KE+LISP
Subjt:  MPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISP

Query:  GKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD
        GKHEIIVDNKQHYKF+GRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGR LEMTRR  MLATHAMMGFGKD
Subjt:  GKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD

A0A6J1JHF8 uncharacterized protein LOC1114843828.5e-9291.76Show/hide
Query:  MPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISP
        MPGDGEIT DP IEA SKEACDSK  KRFADDIMPHILNLYGSSATPRDFEIYA DASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEY+VKEKLISP
Subjt:  MPGDGEITADPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISP

Query:  GKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD
        GKHEI VDNKQHYKF+GRNIDLESLIKLYV+EGK++RHEDWWNKKPLLNRETV+LPMVGR+LEMTRRCAMLATHAMM FGKD
Subjt:  GKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G04830.1 Nuclear transport factor 2 (NTF2) family protein7.0e-7071.68Show/hide
Query:  DPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISPGKHEIIVDN
        DP  E   K AC+ K  KRFAD IMPH+LNLYGSSA   DF++YAP+ASFEDPLT A GVK+IKSAFYSL KVF ES+IVEY+++E   SPGK EI++DN
Subjt:  DPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISPGKHEIIVDN

Query:  KQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD
        KQHYK MGRNID+ SLIKLYV +GKIVRHEDWW+KKPL NR+TV  P+VGR++EM RR  MLATHAMMGFGKD
Subjt:  KQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD

AT5G04830.2 Nuclear transport factor 2 (NTF2) family protein7.0e-7071.68Show/hide
Query:  DPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISPGKHEIIVDN
        DP  E   K AC+ K  KRFAD IMPH+LNLYGSSA   DF++YAP+ASFEDPLT A GVK+IKSAFYSL KVF ES+IVEY+++E   SPGK EI++DN
Subjt:  DPTIEAYSKEACDSKFAKRFADDIMPHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISPGKHEIIVDN

Query:  KQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD
        KQHYK MGRNID+ SLIKLYV +GKIVRHEDWW+KKPL NR+TV  P+VGR++EM RR  MLATHAMMGFGKD
Subjt:  KQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCACCTCAAAATGAAGTTGTGGAGGCTTCCGGTTCTGCTTCGCTGCCGAGAAAATTGGACCATTCTCGAAGAACCAAACTCGTTCCGGTAATCATCAACTTCTTTCTTCT
TCGTCTCACTCAACTGCATATTTATTTCATCATTCTCTTCTCTTCACTTTATCTGGATCAATCTGGAAAATCTGGAAAATCCTTCTATTCTAGGCTTCGTTCCTTAGTGT
TCCTAAAAATGCCGGGAGATGGTGAAATCACTGCGGATCCAACTATCGAAGCCTACAGCAAGGAGGCATGCGATTCCAAATTCGCGAAGCGTTTTGCCGATGATATCATG
CCTCACATCCTCAATCTGTATGGATCTTCTGCAACGCCTCGGGATTTTGAAATCTACGCTCCCGATGCTTCGTTCGAGGATCCACTTACAAGAGCTCACGGAGTGAAGGA
AATCAAATCGGCATTTTATTCTCTGTCCAAGGTATTTAGTGAATCAAGAATTGTGGAATACAATGTCAAAGAAAAACTTATTTCCCCTGGAAAACACGAGATTATAGTCG
ATAATAAGCAACACTACAAGTTTATGGGAAGAAACATAGATTTGGAATCACTCATCAAGTTGTATGTTGTTGAAGGAAAAATAGTTCGTCATGAGGACTGGTGGAATAAG
AAACCACTTTTGAATAGAGAAACAGTCCAATTACCAATGGTTGGTCGAATTTTGGAAATGACTCGCAGATGTGCGATGTTAGCAACTCATGCAATGATGGGATTTGGAAA
AGAT
mRNA sequenceShow/hide mRNA sequence
CCACCTCAAAATGAAGTTGTGGAGGCTTCCGGTTCTGCTTCGCTGCCGAGAAAATTGGACCATTCTCGAAGAACCAAACTCGTTCCGGTAATCATCAACTTCTTTCTTCT
TCGTCTCACTCAACTGCATATTTATTTCATCATTCTCTTCTCTTCACTTTATCTGGATCAATCTGGAAAATCTGGAAAATCCTTCTATTCTAGGCTTCGTTCCTTAGTGT
TCCTAAAAATGCCGGGAGATGGTGAAATCACTGCGGATCCAACTATCGAAGCCTACAGCAAGGAGGCATGCGATTCCAAATTCGCGAAGCGTTTTGCCGATGATATCATG
CCTCACATCCTCAATCTGTATGGATCTTCTGCAACGCCTCGGGATTTTGAAATCTACGCTCCCGATGCTTCGTTCGAGGATCCACTTACAAGAGCTCACGGAGTGAAGGA
AATCAAATCGGCATTTTATTCTCTGTCCAAGGTATTTAGTGAATCAAGAATTGTGGAATACAATGTCAAAGAAAAACTTATTTCCCCTGGAAAACACGAGATTATAGTCG
ATAATAAGCAACACTACAAGTTTATGGGAAGAAACATAGATTTGGAATCACTCATCAAGTTGTATGTTGTTGAAGGAAAAATAGTTCGTCATGAGGACTGGTGGAATAAG
AAACCACTTTTGAATAGAGAAACAGTCCAATTACCAATGGTTGGTCGAATTTTGGAAATGACTCGCAGATGTGCGATGTTAGCAACTCATGCAATGATGGGATTTGGAAA
AGAT
Protein sequenceShow/hide protein sequence
PPQNEVVEASGSASLPRKLDHSRRTKLVPVIINFFLLRLTQLHIYFIILFSSLYLDQSGKSGKSFYSRLRSLVFLKMPGDGEITADPTIEAYSKEACDSKFAKRFADDIM
PHILNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISPGKHEIIVDNKQHYKFMGRNIDLESLIKLYVVEGKIVRHEDWWNK
KPLLNRETVQLPMVGRILEMTRRCAMLATHAMMGFGKD