; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G001600 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G001600
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNudix hydrolase
Genome locationchr04:1796567..1798326
RNA-Seq ExpressionLsi04G001600
SyntenyLsi04G001600
Gene Ontology termsGO:0006753 - nucleoside phosphate metabolic process (biological process)
GO:0019693 - ribose phosphate metabolic process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0008893 - guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity (molecular function)
GO:0034432 - bis(5'-adenosyl)-pentaphosphatase activity (molecular function)
InterPro domainsIPR000086 - NUDIX hydrolase domain
IPR015797 - NUDIX hydrolase-like domain superfamily
IPR020084 - NUDIX hydrolase, conserved site
IPR020476 - NUDIX hydrolase
IPR022927 - RNA pyrophosphohydrolase RppH


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135042.1 nudix hydrolase 26, chloroplastic [Cucumis sativus]6.6e-6486.62Show/hide
Query:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
        MA+NR VV SHS  H RRP     PP P FSSALRSTSSSMEAPPEGYR+NVGICLIN SKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
Subjt:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET

Query:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        GV+SA+IIAEVPYW+TYDFPPHVREKLR+QWGSDWKGQAQKW
Subjt:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

XP_022150467.1 nudix hydrolase 26, chloroplastic [Momordica charantia]1.5e-6385.71Show/hide
Query:  MAVNRYVVSSHS-FLHCRRPLHLR----SPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRE
        MA+NR VV +HS  LHCRRPL LR    + P+ LFSSA R  SSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIP+AWQMPQGGVDEGEDPR+AAIRE
Subjt:  MAVNRYVVSSHS-FLHCRRPLHLR----SPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRE

Query:  LREETGVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        LREETGVRSAEIIAEVPYWLTYDFPPHVREKLR QWGSDWKGQAQKW
Subjt:  LREETGVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

XP_022968345.1 nudix hydrolase 26, chloroplastic [Cucurbita maxima]5.6e-6386.62Show/hide
Query:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
        MA++R VV +HS LH  R       P PLFS+ALRSTSSSMEAPPEGYRRNVGICL+NSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
Subjt:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET

Query:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        GVRSAEIIAEVPYWLTYDFPPHVREKLR QWGSDWKGQAQKW
Subjt:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

XP_023541253.1 nudix hydrolase 26, chloroplastic [Cucurbita pepo subsp. pepo]5.6e-6388.73Show/hide
Query:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
        MA++R VV +HS LH     + R PPS LFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
Subjt:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET

Query:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        GVRSAEIIAEVPYWLTYDFPPHVREKLR QWGSDWKGQAQKW
Subjt:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

XP_038891804.1 nudix hydrolase 26, chloroplastic [Benincasa hispida]3.6e-7094.37Show/hide
Query:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
        MAVNRYVV SHS LH RRPL LRS PSPLFSS LRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDE EDPRSAAIRELREET
Subjt:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET

Query:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        GVRSAEIIAEVPYWLTYDFPPHVREKLR QWGSDWKGQAQKW
Subjt:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

TrEMBL top hitse value%identityAlignment
A0A0A0KRB9 Nudix hydrolase domain-containing protein3.2e-6486.62Show/hide
Query:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
        MA+NR VV SHS  H RRP     PP P FSSALRSTSSSMEAPPEGYR+NVGICLIN SKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
Subjt:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET

Query:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        GV+SA+IIAEVPYW+TYDFPPHVREKLR+QWGSDWKGQAQKW
Subjt:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

A0A1S3BGM3 nudix hydrolase 26, chloroplastic8.6e-6284.51Show/hide
Query:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
        MA+NRYVV SHS  H RR       P P FSSALRSTSSSMEAPP GYR+NVGICLIN SKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
Subjt:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET

Query:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        GV+SA+IIAEVPYW+TYDFPP VREKLR+QWGSDWKGQAQKW
Subjt:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

A0A6J1DAT2 nudix hydrolase 26, chloroplastic7.1e-6485.71Show/hide
Query:  MAVNRYVVSSHS-FLHCRRPLHLR----SPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRE
        MA+NR VV +HS  LHCRRPL LR    + P+ LFSSA R  SSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIP+AWQMPQGGVDEGEDPR+AAIRE
Subjt:  MAVNRYVVSSHS-FLHCRRPLHLR----SPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRE

Query:  LREETGVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        LREETGVRSAEIIAEVPYWLTYDFPPHVREKLR QWGSDWKGQAQKW
Subjt:  LREETGVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

A0A6J1FZW7 nudix hydrolase 26, chloroplastic-like2.7e-6388.73Show/hide
Query:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
        MA++R VV +HS LH     + R PPS LFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
Subjt:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET

Query:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        GVRSAEIIAEVPYWLTYDFPPHVREKLR QWGSDWKGQAQKW
Subjt:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

A0A6J1HWY8 nudix hydrolase 26, chloroplastic2.7e-6386.62Show/hide
Query:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
        MA++R VV +HS LH  R       P PLFS+ALRSTSSSMEAPPEGYRRNVGICL+NSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET
Subjt:  MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET

Query:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        GVRSAEIIAEVPYWLTYDFPPHVREKLR QWGSDWKGQAQKW
Subjt:  GVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

SwissProt top hitse value%identityAlignment
A3PMX6 RNA pyrophosphohydrolase5.8e-2357.14Show/hide
Query:  YRRNVGICLINSSKKIFAASRLDIP-DAWQMPQGGVDEGEDPRSAAIRELREETGV--RSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        YR  VGI LIN    IFA  R+D P  AWQMPQGG+DEGE PR AA+REL EETG+     E +A+ P W+TYD PP   E L R WG  ++GQ QKW
Subjt:  YRRNVGICLINSSKKIFAASRLDIP-DAWQMPQGGVDEGEDPRSAAIRELREETGV--RSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

Q2RV14 RNA pyrophosphohydrolase1.2e-2353.68Show/hide
Query:  YRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        YR+ VGI LIN+  ++F A RLD P+AWQMPQGG+D GEDP +AA RE+ EE G R+A ++ E   WL YD P  +R +L   WG  ++GQ QKW
Subjt:  YRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

Q9C6Z2 Nudix hydrolase 251.7e-3868.63Show/hide
Query:  MEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQ
        ME  P GYR NVG+CLINS   +F ASRL++P AWQMPQGG+++GEDP+SAA+REL+EETGV SAEI++EVP WLTYDFPP V+ K+ R WG +W GQAQ
Subjt:  MEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQ

Query:  KW
        KW
Subjt:  KW

Q9CAF2 Nudix hydrolase 26, chloroplastic1.1e-4871.11Show/hide
Query:  SSHSFLH-CRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEI
        SS  FLH CR+        S + SS+ R   SSME+PPEGYRRNVG+CL+NSSKKIF ASRLDIP AWQMPQGG+DEGEDPR A +REL+EETGV SAEI
Subjt:  SSHSFLH-CRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEI

Query:  IAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        +AE P+W+TYDFPP VREKL+ +WGSDWKGQAQKW
Subjt:  IAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

Q9FNH4 Nudix hydrolase 27, chloroplastic3.1e-4060.94Show/hide
Query:  CRRPLHLRSP-PSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYW
        C +   + SP P  + S AL S + ++E+PP GYR+NVGICL++  +KIF AS++ IPD WQMPQGG DEGED R+AA RELREETGV SAE IAE+P W
Subjt:  CRRPLHLRSP-PSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYW

Query:  LTYDFPPHVREKLRRQWGSDWKGQAQKW
        LTYDFP  V++KL R+W + +KGQAQKW
Subjt:  LTYDFPPHVREKLRRQWGSDWKGQAQKW

Arabidopsis top hitse value%identityAlignment
AT1G30110.1 nudix hydrolase homolog 251.2e-3968.63Show/hide
Query:  MEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQ
        ME  P GYR NVG+CLINS   +F ASRL++P AWQMPQGG+++GEDP+SAA+REL+EETGV SAEI++EVP WLTYDFPP V+ K+ R WG +W GQAQ
Subjt:  MEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQ

Query:  KW
        KW
Subjt:  KW

AT1G30110.2 nudix hydrolase homolog 251.2e-3968.63Show/hide
Query:  MEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQ
        ME  P GYR NVG+CLINS   +F ASRL++P AWQMPQGG+++GEDP+SAA+REL+EETGV SAEI++EVP WLTYDFPP V+ K+ R WG +W GQAQ
Subjt:  MEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQ

Query:  KW
        KW
Subjt:  KW

AT3G10620.1 nudix hydrolase homolog 267.5e-5071.11Show/hide
Query:  SSHSFLH-CRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEI
        SS  FLH CR+        S + SS+ R   SSME+PPEGYRRNVG+CL+NSSKKIF ASRLDIP AWQMPQGG+DEGEDPR A +REL+EETGV SAEI
Subjt:  SSHSFLH-CRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEI

Query:  IAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW
        +AE P+W+TYDFPP VREKL+ +WGSDWKGQAQKW
Subjt:  IAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW

AT4G25434.2 nudix hydrolase homolog 104.3e-0546.43Show/hide
Query:  YRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVR
        +R  VG  ++N +K+    S L     W++P G VDEGE+  +AAIRE++EETGVR
Subjt:  YRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVR

AT5G06340.1 nudix hydrolase homolog 272.2e-4160.94Show/hide
Query:  CRRPLHLRSP-PSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYW
        C +   + SP P  + S AL S + ++E+PP GYR+NVGICL++  +KIF AS++ IPD WQMPQGG DEGED R+AA RELREETGV SAE IAE+P W
Subjt:  CRRPLHLRSP-PSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYW

Query:  LTYDFPPHVREKLRRQWGSDWKGQAQKW
        LTYDFP  V++KL R+W + +KGQAQKW
Subjt:  LTYDFPPHVREKLRRQWGSDWKGQAQKW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGTAAACCGATATGTCGTTTCTAGTCATTCATTTCTTCACTGTCGTCGTCCTCTTCATCTTCGAAGTCCCCCTTCTCCACTTTTCTCATCTGCTCTGCGT
TCGACCTCCTCATCCATGGAAGCTCCTCCCGAAGGTTACCGCAGAAACGTTGGCATTTGCCTCATCAATTCTTCTAAAAAGATTTTTGCTGCCTCAAGGTTGGAT
ATACCAGATGCTTGGCAAATGCCTCAGGGCGGCGTGGATGAGGGTGAAGATCCAAGAAGCGCAGCCATCAGAGAACTTAGAGAAGAAACAGGAGTCAGATCGGCA
GAGATTATTGCTGAAGTACCTTATTGGCTGACTTATGACTTCCCACCACATGTCCGGGAAAAACTTAGACGTCAGTGGGGTTCTGACTGGAAGGGTCAAGCGCAG
AAGTGGTGA
mRNA sequenceShow/hide mRNA sequence
GAATAAATGAAGCGCGAAGCGTTGGATGAACGCCACTCGTGGAGGGAAAAGGAATGGCCGTAAACCGATATGTCGTTTCTAGTCATTCATTTCTTCACTGTCGTC
GTCCTCTTCATCTTCGAAGTCCCCCTTCTCCACTTTTCTCATCTGCTCTGCGTTCGACCTCCTCATCCATGGAAGCTCCTCCCGAAGGTTACCGCAGAAACGTTG
GCATTTGCCTCATCAATTCTTCTAAAAAGATTTTTGCTGCCTCAAGGTTGGATATACCAGATGCTTGGCAAATGCCTCAGGGCGGCGTGGATGAGGGTGAAGATC
CAAGAAGCGCAGCCATCAGAGAACTTAGAGAAGAAACAGGAGTCAGATCGGCAGAGATTATTGCTGAAGTACCTTATTGGCTGACTTATGACTTCCCACCACATG
TCCGGGAAAAACTTAGACGTCAGTGGGGTTCTGACTGGAAGGGTCAAGCGCAGAAGTGGTGA
Protein sequenceShow/hide protein sequence
MAVNRYVVSSHSFLHCRRPLHLRSPPSPLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSA
EIIAEVPYWLTYDFPPHVREKLRRQWGSDWKGQAQKW