; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G002140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G002140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionZinc finger, B-box
Genome locationchr04:2261146..2262715
RNA-Seq ExpressionLsi04G002140
SyntenyLsi04G002140
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573931.1 putative zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia]5.5e-7874.21Show/hide
Query:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDS-EP
        +LWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDP+GGLFDNKDES+SS+EKD S  K DNR GKGMEASS  S+SCIF    MDKDS +P
Subjt:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDS-EP

Query:  SGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVD---SDCPDRLRGEPSRSSPYHREHKHSIPLDDDAATRMYKEKPQSQLQEKQTRRKVKSLVKKQV
        SGE C  P ST+T+  RPIRPS ST SF +SRMSVD   + CPD   GEPS SSPY RE K S+PL+D AATR YKE  QSQ QEKQ RRK +SLVKK+V
Subjt:  SGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVD---SDCPDRLRGEPSRSSPYHREHKHSIPLDDDAATRMYKEKPQSQLQEKQTRRKVKSLVKKQV

Query:  KGRYEKVERYDSSTVAISRSY
        KGRYE+ ERYDS+ VAISRSY
Subjt:  KGRYEKVERYDSSTVAISRSY

XP_008446649.1 PREDICTED: putative zinc finger protein At1g68190 [Cucumis melo]1.3e-8781.61Show/hide
Query:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESY--SSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSE
        ++WSQNMQDLGVCDELV RDDFNIPEVDLTFQNFDEIFNSDQDP G LFDNKDESY  SSMEKD SLSKS+N DGKGMEASSATSSSCIFSYA MDKDSE
Subjt:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESY--SSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSE

Query:  PSGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVDS---DCPDRLRGEPSRSSPYHREHKHSIPLDD-DAATRMYKEKPQSQLQEKQTRRKVKSLVKK
        PS EVCN PMST+ +S RPI+PSLSTLSFADSRMS+DS   D PDR RGEPS SSPYHR+ KHS+PL++ DAAT++YKEK Q QLQEKQ RRK +SLVKK
Subjt:  PSGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVDS---DCPDRLRGEPSRSSPYHREHKHSIPLDD-DAATRMYKEKPQSQLQEKQTRRKVKSLVKK

Query:  QVKGRYEKVERYDSSTVAISRSY
        +VKGRYEK ERYDSSTVA SRSY
Subjt:  QVKGRYEKVERYDSSTVAISRSY

XP_011655796.1 zinc finger protein CONSTANS-LIKE 9 [Cucumis sativus]6.9e-8982.06Show/hide
Query:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDE--SYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSE
        +LWSQNMQDLGVCDELVCRDDFN+PEVDLTFQNFDEIFNSDQDP GGLFDNKDE  SYSSM+KD SLSKSDNRDGKG+EASSATSSSCIFSYA MDKDSE
Subjt:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDE--SYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSE

Query:  PSGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVDS---DCPDRLRGEPSRSSPYHREHKHSIPLDD-DAATRMYKEKPQSQLQEKQTRRKVKSLVKK
        PS EVCN PMST  +S RPI+PSLSTLSFADSRMS+DS   D PDR RGEPS SSPYHR+ KHS+ L++ DAAT++YKEK Q QLQEKQ RRK +SLVKK
Subjt:  PSGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVDS---DCPDRLRGEPSRSSPYHREHKHSIPLDD-DAATRMYKEKPQSQLQEKQTRRKVKSLVKK

Query:  QVKGRYEKVERYDSSTVAISRSY
        +VKGRYEK ERYDSSTVA SRSY
Subjt:  QVKGRYEKVERYDSSTVAISRSY

XP_022945132.1 putative zinc finger protein At1g68190 isoform X1 [Cucurbita moschata]1.6e-7773.76Show/hide
Query:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDS-EP
        +LWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDP+GGLFDNKDES+SS+EKD S  K DN  GKGM+ASS  S+SCIF    MDKDS +P
Subjt:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDS-EP

Query:  SGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVD---SDCPDRLRGEPSRSSPYHREHKHSIPLDDDAATRMYKEKPQSQLQEKQTRRKVKSLVKKQV
        SGE C  P ST+T+  RPIRPS STLSF +SRMSVD   + CPD   GEPS SSPY RE K S+PL+D AATR YKE  QSQ QEKQ RRK +SLVKK+V
Subjt:  SGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVD---SDCPDRLRGEPSRSSPYHREHKHSIPLDDDAATRMYKEKPQSQLQEKQTRRKVKSLVKKQV

Query:  KGRYEKVERYDSSTVAISRSY
        KGRYE+ ERYDS+ VAISRSY
Subjt:  KGRYEKVERYDSSTVAISRSY

XP_038892501.1 putative zinc finger protein At1g68190 [Benincasa hispida]2.3e-9285.14Show/hide
Query:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSEPS
        +LWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDP GGLFDNKDESYSS+EKD SLSKSDN +GKGMEASSAT SSCIFSYA MDKDSEPS
Subjt:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSEPS

Query:  GEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVDS---DCPDR-LRGEPSRSSPYHREHKHSIPLD-DDAATRMYKEKPQSQLQEKQTRRKVKSLVKKQ
        GEVCN PMSTS +S RPIRPSLSTLSFADSRMSVDS   DCPD   RGEPS SSPYHREHKHSIPLD  D ATRMYKEK QSQ Q+KQ R K +SLVKK+
Subjt:  GEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVDS---DCPDR-LRGEPSRSSPYHREHKHSIPLD-DDAATRMYKEKPQSQLQEKQTRRKVKSLVKKQ

Query:  VKGRYEKVERYDSSTVAISRSY
        V+GRYEK ERYDSST+AISRSY
Subjt:  VKGRYEKVERYDSSTVAISRSY

TrEMBL top hitse value%identityAlignment
A0A0A0KR93 B box-type domain-containing protein3.4e-8982.06Show/hide
Query:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDE--SYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSE
        +LWSQNMQDLGVCDELVCRDDFN+PEVDLTFQNFDEIFNSDQDP GGLFDNKDE  SYSSM+KD SLSKSDNRDGKG+EASSATSSSCIFSYA MDKDSE
Subjt:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDE--SYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSE

Query:  PSGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVDS---DCPDRLRGEPSRSSPYHREHKHSIPLDD-DAATRMYKEKPQSQLQEKQTRRKVKSLVKK
        PS EVCN PMST  +S RPI+PSLSTLSFADSRMS+DS   D PDR RGEPS SSPYHR+ KHS+ L++ DAAT++YKEK Q QLQEKQ RRK +SLVKK
Subjt:  PSGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVDS---DCPDRLRGEPSRSSPYHREHKHSIPLDD-DAATRMYKEKPQSQLQEKQTRRKVKSLVKK

Query:  QVKGRYEKVERYDSSTVAISRSY
        +VKGRYEK ERYDSSTVA SRSY
Subjt:  QVKGRYEKVERYDSSTVAISRSY

A0A1S3BG93 putative zinc finger protein At1g681906.3e-8881.61Show/hide
Query:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESY--SSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSE
        ++WSQNMQDLGVCDELV RDDFNIPEVDLTFQNFDEIFNSDQDP G LFDNKDESY  SSMEKD SLSKS+N DGKGMEASSATSSSCIFSYA MDKDSE
Subjt:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESY--SSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSE

Query:  PSGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVDS---DCPDRLRGEPSRSSPYHREHKHSIPLDD-DAATRMYKEKPQSQLQEKQTRRKVKSLVKK
        PS EVCN PMST+ +S RPI+PSLSTLSFADSRMS+DS   D PDR RGEPS SSPYHR+ KHS+PL++ DAAT++YKEK Q QLQEKQ RRK +SLVKK
Subjt:  PSGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVDS---DCPDRLRGEPSRSSPYHREHKHSIPLDD-DAATRMYKEKPQSQLQEKQTRRKVKSLVKK

Query:  QVKGRYEKVERYDSSTVAISRSY
        +VKGRYEK ERYDSSTVA SRSY
Subjt:  QVKGRYEKVERYDSSTVAISRSY

A0A5D3CCC1 Putative zinc finger protein6.3e-8881.61Show/hide
Query:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESY--SSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSE
        ++WSQNMQDLGVCDELV RDDFNIPEVDLTFQNFDEIFNSDQDP G LFDNKDESY  SSMEKD SLSKS+N DGKGMEASSATSSSCIFSYA MDKDSE
Subjt:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESY--SSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSE

Query:  PSGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVDS---DCPDRLRGEPSRSSPYHREHKHSIPLDD-DAATRMYKEKPQSQLQEKQTRRKVKSLVKK
        PS EVCN PMST+ +S RPI+PSLSTLSFADSRMS+DS   D PDR RGEPS SSPYHR+ KHS+PL++ DAAT++YKEK Q QLQEKQ RRK +SLVKK
Subjt:  PSGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVDS---DCPDRLRGEPSRSSPYHREHKHSIPLDD-DAATRMYKEKPQSQLQEKQTRRKVKSLVKK

Query:  QVKGRYEKVERYDSSTVAISRSY
        +VKGRYEK ERYDSSTVA SRSY
Subjt:  QVKGRYEKVERYDSSTVAISRSY

A0A6J1G033 putative zinc finger protein At1g68190 isoform X17.7e-7873.76Show/hide
Query:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDS-EP
        +LWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDP+GGLFDNKDES+SS+EKD S  K DN  GKGM+ASS  S+SCIF    MDKDS +P
Subjt:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDS-EP

Query:  SGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVD---SDCPDRLRGEPSRSSPYHREHKHSIPLDDDAATRMYKEKPQSQLQEKQTRRKVKSLVKKQV
        SGE C  P ST+T+  RPIRPS STLSF +SRMSVD   + CPD   GEPS SSPY RE K S+PL+D AATR YKE  QSQ QEKQ RRK +SLVKK+V
Subjt:  SGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVD---SDCPDRLRGEPSRSSPYHREHKHSIPLDDDAATRMYKEKPQSQLQEKQTRRKVKSLVKKQV

Query:  KGRYEKVERYDSSTVAISRSY
        KGRYE+ ERYDS+ VAISRSY
Subjt:  KGRYEKVERYDSSTVAISRSY

A0A6J1HXK1 putative zinc finger protein At1g68190 isoform X12.3e-7773.3Show/hide
Query:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDS-EP
        +LWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDP+GGLFDNKDES+SS+EKD    K DN  G GMEASS  S+SCIF    MDKDS +P
Subjt:  ELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDS-EP

Query:  SGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVD---SDCPDRLRGEPSRSSPYHREHKHSIPLDDDAATRMYKEKPQSQLQEKQTRRKVKSLVKKQV
        SGE C  P ST+T+  RPIRPS STLSF DSRMSVD   + CPD   GEPS SSPY RE K S+PL+D AATR YKE  QSQ QEKQ RRK +SLVKK+V
Subjt:  SGEVCNSPMSTSTKSTRPIRPSLSTLSFADSRMSVD---SDCPDRLRGEPSRSSPYHREHKHSIPLDDDAATRMYKEKPQSQLQEKQTRRKVKSLVKKQV

Query:  KGRYEKVERYDSSTVAISRSY
        KGRYE+ +RYDS+ VAISRSY
Subjt:  KGRYEKVERYDSSTVAISRSY

SwissProt top hitse value%identityAlignment
Q9C9F4 Putative zinc finger protein At1g681905.6e-0934.45Show/hide
Query:  ELWSQNMQDLGVCDELVCR-DDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSEP
        +LW QN+QD+GVC++ +C  DDF IP++DLTF+NF+E F +D +PI     N     SS++K   +    +     + A    SS+  FS +  D     
Subjt:  ELWSQNMQDLGVCDELVCR-DDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSEP

Query:  SGEVCNSPMSTSTKSTRPI
        S EV +   S S  + + +
Subjt:  SGEVCNSPMSTSTKSTRPI

Arabidopsis top hitse value%identityAlignment
AT1G68190.1 B-box zinc finger family protein4.0e-1034.45Show/hide
Query:  ELWSQNMQDLGVCDELVCR-DDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSEP
        +LW QN+QD+GVC++ +C  DDF IP++DLTF+NF+E F +D +PI     N     SS++K   +    +     + A    SS+  FS +  D     
Subjt:  ELWSQNMQDLGVCDELVCR-DDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSEP

Query:  SGEVCNSPMSTSTKSTRPI
        S EV +   S S  + + +
Subjt:  SGEVCNSPMSTSTKSTRPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTATGGTCTCAAAATATGCAAGACCTTGGAGTTTGCGACGAGCTTGTTTGTCGTGATGATTTCAACATACCTGAAGTTGATTTGACATTCCAGAACTTTGACGA
AATATTCAACAGTGATCAAGATCCTATTGGAGGCTTGTTTGATAATAAAGATGAGTCGTACTCCTCGATGGAGAAGGATACGTCACTCAGTAAATCGGATAATCGCGATG
GAAAAGGGATGGAGGCAAGCTCGGCGACATCGTCATCTTGCATCTTCTCGTATGCTTTCATGGACAAAGATAGTGAACCCTCTGGTGAAGTTTGTAATTCTCCCATGAGT
ACAAGCACAAAATCCACTCGTCCAATCCGACCCTCCCTTTCAACCTTGTCATTTGCTGATTCAAGGATGAGTGTTGACAGTGATTGCCCTGATCGGCTAAGAGGTGAACC
TTCACGTAGCTCGCCTTACCATCGTGAGCATAAACACTCTATTCCCCTCGACGACGATGCTGCAACAAGAATGTACAAAGAAAAACCGCAGTCTCAATTGCAAGAAAAAC
AAACCCGACGAAAGGTCAAATCTCTCGTCAAGAAACAAGTAAAGGGAAGATACGAAAAGGTCGAGCGATATGACTCCAGTACCGTCGCTATCAGCCGAAGTTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACTATGGTCTCAAAATATGCAAGACCTTGGAGTTTGCGACGAGCTTGTTTGTCGTGATGATTTCAACATACCTGAAGTTGATTTGACATTCCAGAACTTTGACGA
AATATTCAACAGTGATCAAGATCCTATTGGAGGCTTGTTTGATAATAAAGATGAGTCGTACTCCTCGATGGAGAAGGATACGTCACTCAGTAAATCGGATAATCGCGATG
GAAAAGGGATGGAGGCAAGCTCGGCGACATCGTCATCTTGCATCTTCTCGTATGCTTTCATGGACAAAGATAGTGAACCCTCTGGTGAAGTTTGTAATTCTCCCATGAGT
ACAAGCACAAAATCCACTCGTCCAATCCGACCCTCCCTTTCAACCTTGTCATTTGCTGATTCAAGGATGAGTGTTGACAGTGATTGCCCTGATCGGCTAAGAGGTGAACC
TTCACGTAGCTCGCCTTACCATCGTGAGCATAAACACTCTATTCCCCTCGACGACGATGCTGCAACAAGAATGTACAAAGAAAAACCGCAGTCTCAATTGCAAGAAAAAC
AAACCCGACGAAAGGTCAAATCTCTCGTCAAGAAACAAGTAAAGGGAAGATACGAAAAGGTCGAGCGATATGACTCCAGTACCGTCGCTATCAGCCGAAGTTATTGAACT
TCGACTTTGTGTATCATTTTGTACATCATTTTAAGGTTTCTCTTCACCTTCATTCTTTTCAATTAGTTCTCTCAATGCACAGACTTTGAAGTTAGCAGCATATATGGCTA
CACTTTTACTAAAGCTTAGTGCAAACCTTGATAATTTAATCTAATTGACAATCATGAAGGAGATTTGCCTTCTTTTTGTTGAGTTACTTTATCACAGTGGAAATTGGAAG
ATGTTATTTATTA
Protein sequenceShow/hide protein sequence
MELWSQNMQDLGVCDELVCRDDFNIPEVDLTFQNFDEIFNSDQDPIGGLFDNKDESYSSMEKDTSLSKSDNRDGKGMEASSATSSSCIFSYAFMDKDSEPSGEVCNSPMS
TSTKSTRPIRPSLSTLSFADSRMSVDSDCPDRLRGEPSRSSPYHREHKHSIPLDDDAATRMYKEKPQSQLQEKQTRRKVKSLVKKQVKGRYEKVERYDSSTVAISRSY