; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G002230 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G002230
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAuxin-responsive protein
Genome locationchr04:2325985..2329161
RNA-Seq ExpressionLsi04G002230
SyntenyLsi04G002230
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR003311 - AUX/IAA protein
IPR033389 - AUX/IAA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135388.1 auxin-responsive protein IAA32 [Cucumis sativus]8.1e-5769.32Show/hide
Query:  NNNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEED---AEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQ
        +++NNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPE+GI      MNWGG ++DYYCC+++E+    +VVQSK+Q Q+WAYVKVNMDGVIVGRKVCIFQ
Subjt:  NNNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEED---AEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQ

Query:  NATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFVVIHQN
        NA+YSTLALQLEDMFGRQCESGLR                            QFVEGVKRLRIARKDEAFVVIHQN
Subjt:  NATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFVVIHQN

XP_008446639.1 PREDICTED: auxin-responsive protein IAA32 [Cucumis melo]8.1e-5769.32Show/hide
Query:  NNNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEED---AEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQ
        +++NNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPE+GI      MNWGG ++DYYCC+++E+    +VVQSK+Q Q+WAYVKVNMDGVIVGRKVCIFQ
Subjt:  NNNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEED---AEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQ

Query:  NATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFVVIHQN
        NA+YSTLALQLEDMFGRQCESGLR                            QFVEGVKRLRIARKDEAFVVIHQN
Subjt:  NATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFVVIHQN

XP_022957191.1 auxin-responsive protein IAA32-like isoform X2 [Cucurbita moschata]1.8e-4056.63Show/hide
Query:  SVYCEGKGENGIIDLGLSLRTLEQPEV--GIEGGGGY----MNWGGH---------------------------EEDYYCCSNEEDA-EVVQSKQQQQRW
        SVYCEGKGENG IDLGLSLRTL QPEV   IEG G      +NWG                             E+DYYCC  EE+A EVVQSK  QQRW
Subjt:  SVYCEGKGENGIIDLGLSLRTLEQPEV--GIEGGGGY----MNWGGH---------------------------EEDYYCCSNEEDA-EVVQSKQQQQRW

Query:  AYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGL----------------------------RQFVEGVKRLRIARKDEAFVVIHQN
        AYVKVNMDGVIVGRKVCIFQ+ +YS LALQLEDMFGRQCESGL                            +QFVE VKRLRIARKDE FV IHQN
Subjt:  AYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGL----------------------------RQFVEGVKRLRIARKDEAFVVIHQN

XP_022986212.1 auxin-responsive protein IAA32-like isoform X2 [Cucurbita maxima]8.2e-4156.57Show/hide
Query:  SVYCEGKGENGIIDLGLSLRTLEQPEV--GIEGGGGY----MNWGGH-----------------------------EEDYYCCSNEEDA-EVVQSKQQQQ
        SVYCEGKGENG IDLGLSLRTL QPEV   IEG G      MNWG                               E+DYYCC  EE+A EVVQSK  QQ
Subjt:  SVYCEGKGENGIIDLGLSLRTLEQPEV--GIEGGGGY----MNWGGH-----------------------------EEDYYCCSNEEDA-EVVQSKQQQQ

Query:  RWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGL----------------------------RQFVEGVKRLRIARKDEAFVVIHQN
        RWAYVKVNMDGVIVGRKVCIFQ+ +YS+LALQLEDMFGRQCESGL                            +QFVE VKRLRIARKDE FV IHQN
Subjt:  RWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGL----------------------------RQFVEGVKRLRIARKDEAFVVIHQN

XP_038893192.1 auxin-responsive protein IAA32-like [Benincasa hispida]4.8e-5774.85Show/hide
Query:  NNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYS
        +NNELIMNN VYCEGKGENGIIDLGLSLRTLEQPEVGIE  GGYMNWGG  +DYYCC+ EEDAEVVQSK QQQRW YVKVNMDGVIVGRKVCIFQ+A+YS
Subjt:  NNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYS

Query:  TLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFVVIHQN
        TLALQLEDMFGRQCESGLR                            QFVEGVKRLRIARKDEAFV I QN
Subjt:  TLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFVVIHQN

TrEMBL top hitse value%identityAlignment
A0A0A0KT91 Auxin-responsive protein3.9e-5769.32Show/hide
Query:  NNNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEED---AEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQ
        +++NNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPE+GI      MNWGG ++DYYCC+++E+    +VVQSK+Q Q+WAYVKVNMDGVIVGRKVCIFQ
Subjt:  NNNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEED---AEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQ

Query:  NATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFVVIHQN
        NA+YSTLALQLEDMFGRQCESGLR                            QFVEGVKRLRIARKDEAFVVIHQN
Subjt:  NATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFVVIHQN

A0A1S3BG83 Auxin-responsive protein3.9e-5769.32Show/hide
Query:  NNNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEED---AEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQ
        +++NNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPE+GI      MNWGG ++DYYCC+++E+    +VVQSK+Q Q+WAYVKVNMDGVIVGRKVCIFQ
Subjt:  NNNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEED---AEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQ

Query:  NATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFVVIHQN
        NA+YSTLALQLEDMFGRQCESGLR                            QFVEGVKRLRIARKDEAFVVIHQN
Subjt:  NATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFVVIHQN

A0A5D3CD62 Auxin-responsive protein3.9e-5769.32Show/hide
Query:  NNNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEED---AEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQ
        +++NNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPE+GI      MNWGG ++DYYCC+++E+    +VVQSK+Q Q+WAYVKVNMDGVIVGRKVCIFQ
Subjt:  NNNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEED---AEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQ

Query:  NATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFVVIHQN
        NA+YSTLALQLEDMFGRQCESGLR                            QFVEGVKRLRIARKDEAFVVIHQN
Subjt:  NATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFVVIHQN

A0A6J1GYJ4 Auxin-responsive protein8.8e-4156.63Show/hide
Query:  SVYCEGKGENGIIDLGLSLRTLEQPEV--GIEGGGGY----MNWGGH---------------------------EEDYYCCSNEEDA-EVVQSKQQQQRW
        SVYCEGKGENG IDLGLSLRTL QPEV   IEG G      +NWG                             E+DYYCC  EE+A EVVQSK  QQRW
Subjt:  SVYCEGKGENGIIDLGLSLRTLEQPEV--GIEGGGGY----MNWGGH---------------------------EEDYYCCSNEEDA-EVVQSKQQQQRW

Query:  AYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGL----------------------------RQFVEGVKRLRIARKDEAFVVIHQN
        AYVKVNMDGVIVGRKVCIFQ+ +YS LALQLEDMFGRQCESGL                            +QFVE VKRLRIARKDE FV IHQN
Subjt:  AYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGL----------------------------RQFVEGVKRLRIARKDEAFVVIHQN

A0A6J1J6Y8 Auxin-responsive protein4.0e-4156.57Show/hide
Query:  SVYCEGKGENGIIDLGLSLRTLEQPEV--GIEGGGGY----MNWGGH-----------------------------EEDYYCCSNEEDA-EVVQSKQQQQ
        SVYCEGKGENG IDLGLSLRTL QPEV   IEG G      MNWG                               E+DYYCC  EE+A EVVQSK  QQ
Subjt:  SVYCEGKGENGIIDLGLSLRTLEQPEV--GIEGGGGY----MNWGGH-----------------------------EEDYYCCSNEEDA-EVVQSKQQQQ

Query:  RWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGL----------------------------RQFVEGVKRLRIARKDEAFVVIHQN
        RWAYVKVNMDGVIVGRKVCIFQ+ +YS+LALQLEDMFGRQCESGL                            +QFVE VKRLRIARKDE FV IHQN
Subjt:  RWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGL----------------------------RQFVEGVKRLRIARKDEAFVVIHQN

SwissProt top hitse value%identityAlignment
Q38830 Auxin-responsive protein IAA124.9e-0439.44Show/hide
Query:  QRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLRQFVEGVKRLRIARKDEAFVVIHQN
        Q   +VKVNMDGV +GRKV +  +++Y  LA  LE+MF     +  R   E VK LR+      FV+ +++
Subjt:  QRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLRQFVEGVKRLRIARKDEAFVVIHQN

Q38831 Auxin-responsive protein IAA134.4e-0531.76Show/hide
Query:  NEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLRQFVEGVKRLRIARKDEAFVVIHQN
        ++E  +V +    + +  ++KVNMDGV +GRKV +  +++Y  LA  LEDMF R     +    +  K LR+      FV+ +++
Subjt:  NEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLRQFVEGVKRLRIARKDEAFVVIHQN

Q8RYC6 Auxin-responsive protein IAA325.9e-1834.68Show/hide
Query:  NSVYCEGKGENGIIDLGLSLRTLEQPE-------VGIEGGGGYMNWGGHEEDYYCCSNEED------AEVVQSKQQQQR--WAYVKVNMDGVIVGRKVCI
        ++ Y + K   G+IDLGLSLRT++          +G++G G  ++W     +       ED      A+   + + + R  +AYVKVN+DG++VGRKVC+
Subjt:  NSVYCEGKGENGIIDLGLSLRTLEQPE-------VGIEGGGGYMNWGGHEEDYYCCSNEED------AEVVQSKQQQQR--WAYVKVNMDGVIVGRKVCI

Query:  FQNATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFV
             Y+TLALQL DMFG Q  SGLR                            +FVE V R+RIAR+++A +
Subjt:  FQNATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFV

Q9C5X0 Auxin-responsive protein IAA342.9e-1740Show/hide
Query:  GIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLR
        G+IDLGLSLRT+ Q E+    G  Y            CSNE           +++W YVKV MDG++VGRKVC+  + +YSTLA QLEDMFG Q  SGLR
Subjt:  GIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLR

Query:  ----------------------------QFVEGVKRLRIARKDEA
                                    +F+E V+RLRI R+++A
Subjt:  ----------------------------QFVEGVKRLRIARKDEA

Arabidopsis top hitse value%identityAlignment
AT1G15050.1 indole-3-acetic acid inducible 342.1e-1840Show/hide
Query:  GIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLR
        G+IDLGLSLRT+ Q E+    G  Y            CSNE           +++W YVKV MDG++VGRKVC+  + +YSTLA QLEDMFG Q  SGLR
Subjt:  GIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLR

Query:  ----------------------------QFVEGVKRLRIARKDEA
                                    +F+E V+RLRI R+++A
Subjt:  ----------------------------QFVEGVKRLRIARKDEA

AT2G01200.1 indole-3-acetic acid inducible 321.1e-1437.82Show/hide
Query:  NSVYCEGKGENGIIDLGLSLRTLEQPE-------VGIEGGGGYMNWGGHEEDYYCCSNEED------AEVVQSKQQQQR--WAYVKVNMDGVIVGRKVCI
        ++ Y + K   G+IDLGLSLRT++          +G++G G  ++W     +       ED      A+   + + + R  +AYVKVN+DG++VGRKVC+
Subjt:  NSVYCEGKGENGIIDLGLSLRTLEQPE-------VGIEGGGGYMNWGGHEEDYYCCSNEED------AEVVQSKQQQQR--WAYVKVNMDGVIVGRKVCI

Query:  FQNATYSTLALQLEDMFGR
             Y+TLALQL DMF R
Subjt:  FQNATYSTLALQLEDMFGR

AT2G01200.2 indole-3-acetic acid inducible 324.2e-1934.68Show/hide
Query:  NSVYCEGKGENGIIDLGLSLRTLEQPE-------VGIEGGGGYMNWGGHEEDYYCCSNEED------AEVVQSKQQQQR--WAYVKVNMDGVIVGRKVCI
        ++ Y + K   G+IDLGLSLRT++          +G++G G  ++W     +       ED      A+   + + + R  +AYVKVN+DG++VGRKVC+
Subjt:  NSVYCEGKGENGIIDLGLSLRTLEQPE-------VGIEGGGGYMNWGGHEEDYYCCSNEED------AEVVQSKQQQQR--WAYVKVNMDGVIVGRKVCI

Query:  FQNATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFV
             Y+TLALQL DMFG Q  SGLR                            +FVE V R+RIAR+++A +
Subjt:  FQNATYSTLALQLEDMFGRQCESGLR----------------------------QFVEGVKRLRIARKDEAFV

AT2G33310.1 auxin-induced protein 133.1e-0631.76Show/hide
Query:  NEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLRQFVEGVKRLRIARKDEAFVVIHQN
        ++E  +V +    + +  ++KVNMDGV +GRKV +  +++Y  LA  LEDMF R     +    +  K LR+      FV+ +++
Subjt:  NEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLRQFVEGVKRLRIARKDEAFVVIHQN

AT2G33310.2 auxin-induced protein 133.1e-0631.76Show/hide
Query:  NEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLRQFVEGVKRLRIARKDEAFVVIHQN
        ++E  +V +    + +  ++KVNMDGV +GRKV +  +++Y  LA  LEDMF R     +    +  K LR+      FV+ +++
Subjt:  NEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYSTLALQLEDMFGRQCESGLRQFVEGVKRLRIARKDEAFVVIHQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGTAATAATAATAATAATAATGAGTTGATTATGAACAACTCTGTTTATTGTGAAGGGAAAGGGGAAAATGGGATAATAGATTTGGGGTTGAGCTTAAGAACTTT
GGAGCAGCCAGAAGTGGGAATAGAAGGAGGAGGAGGGTACATGAATTGGGGAGGACATGAAGAAGATTACTATTGTTGTAGTAATGAGGAAGATGCAGAGGTTGTGCAGA
GCAAACAACAACAGCAGAGGTGGGCTTATGTTAAAGTCAATATGGATGGTGTCATTGTTGGTAGGAAAGTTTGCATCTTTCAAAATGCTACCTATTCCACTCTTGCCCTT
CAACTTGAAGATATGTTTGGTCGACAATGTGAATCTGGACTGAGGCAATTCGTGGAAGGTGTGAAGAGGCTAAGAATTGCTAGGAAAGATGAGGCTTTTGTTGTTATTCA
TCAAAATTAG
mRNA sequenceShow/hide mRNA sequence
TGTGAATGAGAAAATGGAGAGTAATAATAATAATAATAATGAGTTGATTATGAACAACTCTGTTTATTGTGAAGGGAAAGGGGAAAATGGGATAATAGATTTGGGGTTGA
GCTTAAGAACTTTGGAGCAGCCAGAAGTGGGAATAGAAGGAGGAGGAGGGTACATGAATTGGGGAGGACATGAAGAAGATTACTATTGTTGTAGTAATGAGGAAGATGCA
GAGGTTGTGCAGAGCAAACAACAACAGCAGAGGTGGGCTTATGTTAAAGTCAATATGGATGGTGTCATTGTTGGTAGGAAAGTTTGCATCTTTCAAAATGCTACCTATTC
CACTCTTGCCCTTCAACTTGAAGATATGTTTGGTCGACAATGTGAATCTGGACTGAGGCAATTCGTGGAAGGTGTGAAGAGGCTAAGAATTGCTAGGAAAGATGAGGCTT
TTGTTGTTATTCATCAAAATTAGAAATGAAACCTCAAAATGCAACTTCTTAATGGGAATTTTATTTTGTGTTAAGTTGGAGGCATCTGACTATTTATCTAATTTAAGGAC
CCTTTATAACAATATCAGTTTTTATGTTGTA
Protein sequenceShow/hide protein sequence
MESNNNNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGGGGYMNWGGHEEDYYCCSNEEDAEVVQSKQQQQRWAYVKVNMDGVIVGRKVCIFQNATYSTLAL
QLEDMFGRQCESGLRQFVEGVKRLRIARKDEAFVVIHQN