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Lsi04G002260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G002260
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionReticulon-like protein
Genome locationchr04:2342383..2343915
RNA-Seq ExpressionLsi04G002260
SyntenyLsi04G002260
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR003388 - Reticulon
IPR045064 - Reticulon-like protein, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034583.1 reticulon-like protein B14 [Cucumis melo var. makuwa]5.0e-2644.94Show/hide
Query:  MLWKNKRESAAMAAGISGVWLVVE----------------------------------------------------------------------------
        MLWKNK+ESAAM AG+SGVWL+VE                                                                            
Subjt:  MLWKNKRESAAMAAGISGVWLVVE----------------------------------------------------------------------------

Query:  -VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS
         V GSLW+LSVIGELV+ F+L++IVFVSLQVVPVVYDKYEEEFN+ AS IKS MD  FH +DSNFL+KIPRWH IKQS
Subjt:  -VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS

KAG6573940.1 Reticulon-like protein B14, partial [Cucurbita argyrosperma subsp. sororia]1.0e-1837.29Show/hide
Query:  MLWKNKRESAAMAAGISGVWLVVE----------------------------------------------------------------------------
        MLWK KRESA M AGISGVWL++E                                                                            
Subjt:  MLWKNKRESAAMAAGISGVWLVVE----------------------------------------------------------------------------

Query:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS
        V GS+W++S+IGEL NS NL++IVF+SLQ VP+V DKYEEE ++  SN+KS+MD +FH + SNFL+KIPR   IKQ+
Subjt:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS

XP_022150651.1 reticulon-like protein B14 [Momordica charantia]5.8e-1456.96Show/hide
Query:  LVVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIK
        L   V G LW++S IGEL N+ NL++IVFVSLQ VP +YDKYEEE NQ    +KS    +FH +DSN LSKIPR ++ K
Subjt:  LVVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIK

XP_022945840.1 reticulon-like protein B14 isoform X3 [Cucurbita moschata]3.5e-1937.85Show/hide
Query:  MLWKNKRESAAMAAGISGVWLVVE----------------------------------------------------------------------------
        MLWK KRESAAM AGISGVWL++E                                                                            
Subjt:  MLWKNKRESAAMAAGISGVWLVVE----------------------------------------------------------------------------

Query:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS
        V GS+W++S+IGEL NS NL++IVF+SLQ VP+V DKYEEE ++  SN+KS+MD +FH + SNFL+KIPR   IKQ+
Subjt:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS

XP_022968135.1 reticulon-like protein B14 [Cucurbita maxima]1.1e-1760.49Show/hide
Query:  LVVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS
        L   V GS+W++S+IGEL+NS NL++IVF+SLQ VP+V DKYEEE ++  SN+KS+MD +FH + SNFLSKIPR   IKQ+
Subjt:  LVVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS

TrEMBL top hitse value%identityAlignment
A0A2H5PGS2 Reticulon-like protein6.7e-0836.17Show/hide
Query:  MLWKNKRESAAMAAGISGVWLVVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPR
        +LWKN   SA++  G++ +W + EV   L++ SVIG   +  NL+++ F+ +  VP +YD+Y+E  +  A      M   F   +S FL+KIPR
Subjt:  MLWKNKRESAAMAAGISGVWLVVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPR

A0A5D3CCB1 Reticulon-like protein2.4e-2644.94Show/hide
Query:  MLWKNKRESAAMAAGISGVWLVVE----------------------------------------------------------------------------
        MLWKNK+ESAAM AG+SGVWL+VE                                                                            
Subjt:  MLWKNKRESAAMAAGISGVWLVVE----------------------------------------------------------------------------

Query:  -VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS
         V GSLW+LSVIGELV+ F+L++IVFVSLQVVPVVYDKYEEEFN+ AS IKS MD  FH +DSNFL+KIPRWH IKQS
Subjt:  -VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS

A0A6J1DC54 Reticulon-like protein2.8e-1456.96Show/hide
Query:  LVVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIK
        L   V G LW++S IGEL N+ NL++IVFVSLQ VP +YDKYEEE NQ    +KS    +FH +DSN LSKIPR ++ K
Subjt:  LVVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIK

A0A6J1G247 Reticulon-like protein1.7e-1937.85Show/hide
Query:  MLWKNKRESAAMAAGISGVWLVVE----------------------------------------------------------------------------
        MLWK KRESAAM AGISGVWL++E                                                                            
Subjt:  MLWKNKRESAAMAAGISGVWLVVE----------------------------------------------------------------------------

Query:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS
        V GS+W++S+IGEL NS NL++IVF+SLQ VP+V DKYEEE ++  SN+KS+MD +FH + SNFL+KIPR   IKQ+
Subjt:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS

A0A6J1HWC4 Reticulon-like protein5.5e-1860.49Show/hide
Query:  LVVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS
        L   V GS+W++S+IGEL+NS NL++IVF+SLQ VP+V DKYEEE ++  SN+KS+MD +FH + SNFLSKIPR   IKQ+
Subjt:  LVVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS

SwissProt top hitse value%identityAlignment
A2RVT6 Reticulon-like protein B143.2e-0740.3Show/hide
Query:  SLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPR
        SLW+LSV+G   +S  L++IVFV L+ +P++Y++YEEE    AS    +M    +  +S  ++KIP+
Subjt:  SLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPR

O82352 Reticulon-like protein B53.9e-0534.78Show/hide
Query:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIP
        V   LW++SV+G   N   L++I FV L  VP++Y+K+E++ +  A      +   + + D   LSKIP
Subjt:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIP

Q6DBN4 Reticulon-like protein B65.1e-0533.33Show/hide
Query:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIP
        V   LW++SV+G   N   L++I FV L  VP++Y+K+E++ +  A      +  ++ + D   LSK+P
Subjt:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIP

Q9LJQ5 Reticulon-like protein B93.8e-0844.93Show/hide
Query:  TGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPR
        T SL+++S+IG   N  NL+FI FVS+Q +PV+Y+ YE++ +  A  +   M   +  VD+N LSKIPR
Subjt:  TGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPR

Q9M145 Reticulon-like protein B77.1e-0738.89Show/hide
Query:  VVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIP
        V+ V G LW++SVIG   +  +L++I FV +  VP++Y+KYE+E +  A      M  ++ + ++ FLSKIP
Subjt:  VVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIP

Arabidopsis top hitse value%identityAlignment
AT2G46170.1 Reticulon family protein2.8e-0634.78Show/hide
Query:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIP
        V   LW++SV+G   N   L++I FV L  VP++Y+K+E++ +  A      +   + + D   LSKIP
Subjt:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIP

AT3G18260.1 Reticulon family protein2.7e-0944.93Show/hide
Query:  TGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPR
        T SL+++S+IG   N  NL+FI FVS+Q +PV+Y+ YE++ +  A  +   M   +  VD+N LSKIPR
Subjt:  TGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPR

AT3G61560.1 Reticulon family protein3.6e-0633.33Show/hide
Query:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIP
        V   LW++SV+G   N   L++I FV L  VP++Y+K+E++ +  A      +  ++ + D   LSK+P
Subjt:  VTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIP

AT4G01230.1 Reticulon family protein5.1e-0838.89Show/hide
Query:  VVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIP
        V+ V G LW++SVIG   +  +L++I FV +  VP++Y+KYE+E +  A      M  ++ + ++ FLSKIP
Subjt:  VVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIP

AT4G11220.1 VIRB2-interacting protein 21.1e-0533.33Show/hide
Query:  LWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPR
        LW+LS++G   +   L +I  V L  VP+ YDKYE++ + +     + +   + ++D+   SKIPR
Subjt:  LWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTGGAAGAATAAGAGAGAATCGGCGGCGATGGCGGCCGGAATCAGTGGTGTTTGGTTGGTGGTGGAGGTAACAGGTAGCCTTTGGATGTTATCAGTCATTGGGGA
GTTGGTAAACTCATTCAATCTCATGTTCATTGTGTTTGTGAGCTTACAAGTAGTTCCTGTTGTGTACGACAAGTACGAGGAGGAATTCAACCAGTTTGCCTCCAACATCA
AATCTAATATGGATTACTACTTCCATATTGTTGACTCCAATTTTCTCAGCAAAATTCCAAGGTGGCATCAAATCAAGCAGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTGGAAGAATAAGAGAGAATCGGCGGCGATGGCGGCCGGAATCAGTGGTGTTTGGTTGGTGGTGGAGGTAACAGGTAGCCTTTGGATGTTATCAGTCATTGGGGA
GTTGGTAAACTCATTCAATCTCATGTTCATTGTGTTTGTGAGCTTACAAGTAGTTCCTGTTGTGTACGACAAGTACGAGGAGGAATTCAACCAGTTTGCCTCCAACATCA
AATCTAATATGGATTACTACTTCCATATTGTTGACTCCAATTTTCTCAGCAAAATTCCAAGGTGGCATCAAATCAAGCAGTCTTAA
Protein sequenceShow/hide protein sequence
MLWKNKRESAAMAAGISGVWLVVEVTGSLWMLSVIGELVNSFNLMFIVFVSLQVVPVVYDKYEEEFNQFASNIKSNMDYYFHIVDSNFLSKIPRWHQIKQS