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Lsi04G002270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G002270
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein of unknown function (DUF1218)
Genome locationchr04:2347462..2348292
RNA-Seq ExpressionLsi04G002270
SyntenyLsi04G002270
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009606 - Modifying wall lignin-1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601276.1 hypothetical protein SDJN03_06509, partial [Cucurbita argyrosperma subsp. sororia]2.2e-3784.54Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK
        ISF+GAEIGLLAGSARNAYHTKYRAAFG E+LSCATLRKGVFAGA AMTVLSMVGSILYYW HSKADTGGW+KQ+NE GVG+AA  H+LKQNA+ +K
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK

XP_022957388.1 uncharacterized protein LOC111458800 isoform X2 [Cucurbita moschata]1.1e-3683.51Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK
        ISF+GAEIGLLAGSARNAYHTKYRAAFG E+LSCATLRKGVFAGA AMTVLSMVGSI YYW HSKADTGGW+KQ+NE GVG+AA  H+LKQNA+ +K
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK

XP_022986328.1 uncharacterized protein LOC111484079 [Cucurbita maxima]7.4e-3885.57Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK
        ISF+GAEIGLLAGSARNAYHTKYRAAFG E+LSCATLRKGVFAGA AMTVLSMVGSILYYW HSKADTGGW+KQ+NE GVG+AA VH+LKQNA+ +K
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK

XP_023514518.1 uncharacterized protein LOC111778772 [Cucurbita pepo subsp. pepo]4.8e-3784.54Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK
        ISF+GAEIGLLAGSARNAYHTKYRAA G E+LSCATLRKGVFAGA AMTVLSMVGSILYYW HSKADTGGW+KQ+NE GVG+AA VH+LKQNA  +K
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK

XP_038892755.1 uncharacterized protein LOC120081728 [Benincasa hispida]3.2e-4190.62Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENEGVGMAASVHELKQNARFEK
        ISF+GAEI LLAGSARNAYHTKYRAAFGVEELSC TLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEK +NEGVGMAA VH+LKQN +FEK
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENEGVGMAASVHELKQNARFEK

TrEMBL top hitse value%identityAlignment
A0A5A7STY1 Uncharacterized protein1.3e-3587.1Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENEGVGM--AASVH-ELKQ
        ISF+GAEIGLLAGSARNAYHTKYRA FGVE+LSCATLRKGVFAGAAAMTVLSMVGSIL+YWMHSKADTGGWEK +NEGVGM  AA VH ++KQ
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENEGVGM--AASVH-ELKQ

A0A5D3CD50 Uncharacterized protein1.3e-3587.1Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENEGVGM--AASVH-ELKQ
        ISF+GAEIGLLAGSARNAYHTKYRA FGVE+LSCATLRKGVFAGAAAMTVLSMVGSIL+YWMHSKADTGGWEK +NEGVGM  AA VH ++KQ
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENEGVGM--AASVH-ELKQ

A0A6J1GYZ6 uncharacterized protein LOC111458800 isoform X15.2e-3783.51Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK
        ISF+GAEIGLLAGSARNAYHTKYRAAFG E+LSCATLRKGVFAGA AMTVLSMVGSI YYW HSKADTGGW+KQ+NE GVG+AA  H+LKQNA+ +K
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK

A0A6J1H027 uncharacterized protein LOC111458800 isoform X25.2e-3783.51Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK
        ISF+GAEIGLLAGSARNAYHTKYRAAFG E+LSCATLRKGVFAGA AMTVLSMVGSI YYW HSKADTGGW+KQ+NE GVG+AA  H+LKQNA+ +K
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK

A0A6J1JG73 uncharacterized protein LOC1114840793.6e-3885.57Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK
        ISF+GAEIGLLAGSARNAYHTKYRAAFG E+LSCATLRKGVFAGA AMTVLSMVGSILYYW HSKADTGGW+KQ+NE GVG+AA VH+LKQNA+ +K
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENE-GVGMAASVHELKQNARFEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52910.1 Protein of unknown function (DUF1218)5.3e-1047.14Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEE-LSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTG
        + FL AE+ LLAGS RNAYHT YR  + +E   SC  +RKGVFA  A+  + + + S  YY  +S+A  G
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEE-LSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTG

AT1G61065.1 Protein of unknown function (DUF1218)7.5e-1245.88Show/hide
Query:  TLISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENEGVGMAA
        T + F  A++ LLAGS RNAYHTKYR  FG    SC +LRKGVF   AA  VL+ + S LYY   S+A    ++   + G+ M++
Subjt:  TLISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENEGVGMAA

AT1G68220.1 Protein of unknown function (DUF1218)1.1e-2354Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENEGVGMAASVHE---LKQNARFEKV
        +SFLGAE  LL GSARNAYHTK    +  +ELSCA L  GVFA  AA T++S++ +ILYY  HSKADTGGWEK +N+G+ +  +       +QN  F KV
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENEGVGMAASVHE---LKQNARFEKV

AT3G15480.1 Protein of unknown function (DUF1218)7.0e-1050.75Show/hide
Query:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEE-LSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKA
        + FL AE+ LLA S RNAYHT+YR  + VE+  SC  +RKGVFA  AA T+ + + S  YY  +S+A
Subjt:  ISFLGAEIGLLAGSARNAYHTKYRAAFGVEE-LSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKA

AT4G27435.1 Protein of unknown function (DUF1218)5.3e-1051.56Show/hide
Query:  FLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKA
        FL AEI LLAGS  NAYHTKYR  F      C TLRKGVFA  A+    + + S  YY+ +  A
Subjt:  FLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCTGATTAGTTTTCTGGGAGCAGAGATCGGACTGTTGGCCGGATCGGCGAGGAATGCTTACCACACAAAGTACAGAGCGGCGTTTGGGGTGGAAGAATTGTCGTG
TGCGACTCTCCGGAAGGGGGTGTTTGCGGGCGCCGCCGCCATGACGGTGCTGTCGATGGTGGGTTCGATTTTGTACTACTGGATGCATTCGAAAGCTGATACAGGGGGAT
GGGAGAAGCAAGAGAATGAAGGTGTTGGAATGGCAGCGAGTGTTCATGAACTGAAACAAAATGCTCGATTTGAGAAGGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTCTGATTAGTTTTCTGGGAGCAGAGATCGGACTGTTGGCCGGATCGGCGAGGAATGCTTACCACACAAAGTACAGAGCGGCGTTTGGGGTGGAAGAATTGTCGTG
TGCGACTCTCCGGAAGGGGGTGTTTGCGGGCGCCGCCGCCATGACGGTGCTGTCGATGGTGGGTTCGATTTTGTACTACTGGATGCATTCGAAAGCTGATACAGGGGGAT
GGGAGAAGCAAGAGAATGAAGGTGTTGGAATGGCAGCGAGTGTTCATGAACTGAAACAAAATGCTCGATTTGAGAAGGTATAAGAGGTAGATTGGTTTGGTTTTTGGTTT
TGTTTTTGTCATTTGTGAGATGATTATTGTTTGTTTGTTATTATAATGGAAAAGTGTTTGTTTCTAAGGAAGAAAAAAAGGGGAAAGTGTTGCAAAGCACTAATATCAAT
CATCAATCAAGCTTTGCTTTTCTTCTTGTCTTTTGCTTTAAGTGTCTCGTATTTTAAGGATTTTTTCTCCTTTTAGGACGCGTCATTTTGAAGTTCCAACTTAATCAATT
TATACATGTGGAACCTTTGGTTAGGTTAGGTTAGTGTAAATAACTCAACTTTAATGGTAAATACTATTTTTTATATTTACTAAGGAATTCAATCTTTCCTTTTATCTCTA
CATTTTACATTTATCGAGTAATTTTATCTTATTCTTCTTAATCTACTTTTTCACAATTATAGAGAAACTTCATCTTACAACTCTACGCCCTAAATACAAACTTACTAATT
TTAGCATATTAAACCTAAACTTATTAATTATACCCAAGGCCAAAAGCCCA
Protein sequenceShow/hide protein sequence
MTLISFLGAEIGLLAGSARNAYHTKYRAAFGVEELSCATLRKGVFAGAAAMTVLSMVGSILYYWMHSKADTGGWEKQENEGVGMAASVHELKQNARFEKV