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Lsi04G002280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G002280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein of unknown function (DUF1218)
Genome locationchr04:2348394..2349607
RNA-Seq ExpressionLsi04G002280
SyntenyLsi04G002280
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009606 - Modifying wall lignin-1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011655790.1 uncharacterized protein LOC101216289 [Cucumis sativus]2.8e-4395Show/hide
Query:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
        MA+SAIVLATITSLHLIAFVLAVGAERRRSTA +VPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQ VVNGVTRCFCCGKGLISGK TTVAIFFFVFSW
Subjt:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
XP_022957387.1 uncharacterized protein LOC111458800 isoform X1 [Cucurbita moschata]4.7e-4396Show/hide
Query:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
        MALSAIVL TITSLHLIAFVLAVGAERRRSTAKVVPDEYDE TYCVYGTDASTVYGLSAFGLLLISQ VVNGVTRCFCCGKGLISGK TTVAIFFFVFSW
Subjt:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
XP_022986328.1 uncharacterized protein LOC111484079 [Cucurbita maxima]4.7e-4396Show/hide
Query:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
        MALSAIVL TITSLHLIAFVLAVGAERRRSTAKVVPDEYDE TYCVYGTDASTVYGLSAFGLLLISQ VVNGVTRCFCCGKGLISGK TTVAIFFFVFSW
Subjt:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
XP_023514518.1 uncharacterized protein LOC111778772 [Cucurbita pepo subsp. pepo]4.7e-4396Show/hide
Query:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
        MALSAIVL TITSLHLIAFVLAVGAERRRSTAKVVPDEYDE TYCVYGTDASTVYGLSAFGLLLISQ VVNGVTRCFCCGKGLISGK TTVAIFFFVFSW
Subjt:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
XP_038892755.1 uncharacterized protein LOC120081728 [Benincasa hispida]5.6e-4497Show/hide
Query:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
        MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYC+YGTDASTVYGLSAFGLLLISQ VVNGVTRCFCCGKGLISGK TTVAIFFFVFSW
Subjt:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
TrEMBL top hitse value%identityAlignment
A0A0A0KWH0 Uncharacterized protein1.3e-4395Show/hide
Query:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
        MA+SAIVLATITSLHLIAFVLAVGAERRRSTA +VPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQ VVNGVTRCFCCGKGLISGK TTVAIFFFVFSW
Subjt:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
A0A1S3BF21 uncharacterized protein LOC1034893083.9e-4395Show/hide
Query:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
        MA+SAIVLATI SLHLIAFVLAVGAERRRSTA VVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQ VVNGVTRCFCCGKGLISGK TTVAIFFFVFSW
Subjt:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
A0A5D3CD50 Uncharacterized protein3.9e-4395Show/hide
Query:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
        MA+SAIVLATI SLHLIAFVLAVGAERRRSTA VVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQ VVNGVTRCFCCGKGLISGK TTVAIFFFVFSW
Subjt:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
A0A6J1GYZ6 uncharacterized protein LOC111458800 isoform X12.3e-4396Show/hide
Query:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
        MALSAIVL TITSLHLIAFVLAVGAERRRSTAKVVPDEYDE TYCVYGTDASTVYGLSAFGLLLISQ VVNGVTRCFCCGKGLISGK TTVAIFFFVFSW
Subjt:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
A0A6J1JG73 uncharacterized protein LOC1114840792.3e-4396Show/hide
Query:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
        MALSAIVL TITSLHLIAFVLAVGAERRRSTAKVVPDEYDE TYCVYGTDASTVYGLSAFGLLLISQ VVNGVTRCFCCGKGLISGK TTVAIFFFVFSW
Subjt:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G13380.1 Protein of unknown function (DUF1218)4.9e-1438Show/hide
Query:  SAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSWYVY
        S +V   + +L L+AF  ++ AERRRS  K + D     T+CVY +D +T YG+ AF  LL S+ ++  VT+C C G+ L  G     +I +F+ SW  +
Subjt:  SAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSWYVY
AT1G52910.1 Protein of unknown function (DUF1218)6.2e-1746Show/hide
Query:  SAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSWYVY
        S +V+  +  L LIA  LA+ AE+RRS  KVVPD   E  +C YG+D +T YG  AF LL ISQV++   +RCFCCGK L  G      I  F+  W  +
Subjt:  SAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSWYVY
AT1G68220.1 Protein of unknown function (DUF1218)3.1e-3269.31Show/hide
Query:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTV-AIFFFVFS
        MA+S  +L  +T+LHL+AFV A GAERRRSTA  VPD+YDEKT C YGT+ASTVYG+SAFGLLL+SQ VVNGVT+C C GKGL++G   TV AI FFV S
Subjt:  MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTV-AIFFFVFS

Query:  W
        W
Subjt:  W
AT3G15480.1 Protein of unknown function (DUF1218)2.8e-1746Show/hide
Query:  SAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSWYVY
        S +V+  +  L LIA  LA+ AE+RRS  KV  D   +  YCVYGTD +T YG  AF LL +SQV++   +RCFCCGK L  G     AI  F+  W  +
Subjt:  SAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSWYVY
AT4G27435.1 Protein of unknown function (DUF1218)2.8e-1747Show/hide
Query:  SAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSWYVY
        S IV A +   +LIAF LAV AE+RRSTA+VV D   +  YCVY +D +T YG+ AF   + SQ+++  V+RCFCCGK L  G    +A+  F+ SW  +
Subjt:  SAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSWYVY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTTTCAGCTATTGTTTTGGCCACCATCACTTCTCTCCATCTCATAGCCTTCGTCCTCGCCGTCGGCGCCGAGCGCCGCCGCAGCACCGCTAAGGTTGTGCCAGA
TGAGTACGATGAAAAGACTTATTGTGTGTACGGCACCGACGCATCGACGGTGTACGGATTATCGGCGTTCGGTTTACTTCTGATAAGCCAGGTGGTGGTTAACGGCGTTA
CTAGATGTTTCTGCTGTGGGAAAGGTTTAATTAGTGGAAAAATCACCACTGTCGCCATTTTCTTCTTTGTCTTTTCTTGGTATGTATATCAAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATTTACTTTTTGATACTACAAAGAAAATAAACCATAATGGAAAATATGATGGGTTACATGATATTTGAACATTGTCTAATCAATTTATCATGAATAATTTTAAAAAATAG
AAAAATAAAAAAAATATATTTATACAAAATAACAAAAAAAAATTTAGATAGTTGTGATATGTTTAGGACTATTAGTGATAGAAATGATACAAGTGTATCAATGTCTATCC
GTATTTTTTTTTACTATTTTTTATAAAAAAATTGACATTTTTTTTATTCGTATTTTCCATTTAGTAGAAATTTTGGTGATATGCTCTCAAAGCATTTCTTATTACCATTC
ATATTCAAACATTTTTTTTAATTCATAAACCAAGCACCGAAAATAACCTCCTATAGCCGGTGAGGCAACCGGAAAACAGGGACTTCGATACTCCAAATAACGGTCCCACT
TCTAAAAAAAACAAAGCAAAAAAAGCAAAACTGTGTAATAAACTAAACCACTATAACAAAGAAAATACACCCAATGAAATATTGCCACGTATGCAGCCCAACTTTAAACC
AAACTTATTGGTGATAATAATGAACACAGTAAAAACAAAAAGCAGAGAATCAAAACTCAGTAGTCAGAGTGGCCACTGAATCAAACCTCGGCAGCCATCCCAAGAAAGGC
AAAAGCTCCAGCTCCGCCACATTCTTCAATACCAAAATCGCCAAATTTCCATAAAAAATCAGATTAAATTTCAAAATTTGAAGCCGCCCCAATTCTTTTTCTTCTTCTTC
CTTCAAAAAAAGAGCAAAAAATGGCACTTTCAGCTATTGTTTTGGCCACCATCACTTCTCTCCATCTCATAGCCTTCGTCCTCGCCGTCGGCGCCGAGCGCCGCCGCAGC
ACCGCTAAGGTTGTGCCAGATGAGTACGATGAAAAGACTTATTGTGTGTACGGCACCGACGCATCGACGGTGTACGGATTATCGGCGTTCGGTTTACTTCTGATAAGCCA
GGTGGTGGTTAACGGCGTTACTAGATGTTTCTGCTGTGGGAAAGGTTTAATTAGTGGAAAAATCACCACTGTCGCCATTTTCTTCTTTGTCTTTTCTTGGTATGTATATC
AAAATTGA
Protein sequenceShow/hide protein sequence
MALSAIVLATITSLHLIAFVLAVGAERRRSTAKVVPDEYDEKTYCVYGTDASTVYGLSAFGLLLISQVVVNGVTRCFCCGKGLISGKITTVAIFFFVFSWYVYQN