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Lsi04G002480 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G002480
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L15, chloroplastic
Genome locationchr04:2533020..2533277
RNA-Seq ExpressionLsi04G002480
SyntenyLsi04G002480
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005749 - Ribosomal protein L15, bacterial-type
IPR021131 - Ribosomal protein L18e/L15P
IPR036227 - Ribosomal L18e/L15P superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034559.1 50S ribosomal protein L15 [Cucumis melo var. makuwa]1.1e-2696Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
        L+ILADGEL+VKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQ+SA
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA

XP_004135093.1 50S ribosomal protein L15, chloroplastic [Cucumis sativus]5.0e-2797.33Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
        L+ILADGEL+VKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA

XP_008446604.1 PREDICTED: 50S ribosomal protein L15, chloroplastic [Cucumis melo]1.1e-2696Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
        L+ILADGEL+VKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQ+SA
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA

XP_022945908.1 50S ribosomal protein L15, chloroplastic-like [Cucurbita moschata]5.5e-2693.33Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
        L+ILADGEL+VKLNIKARAFSSAAKEKLEAAGC+LTVLPGRKKWVKPSVAKNLARAEEYFAKK+AAAAAAEQA+A
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA

XP_022968128.1 50S ribosomal protein L15, chloroplastic-like [Cucurbita maxima]5.5e-2693.33Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
        L+ILADGEL+VKLNIKARAFSSAAKEKLEAAGC+LTVLPGRKKWVKPSVAKNLARAEEYFAKK+AAAAAAEQA+A
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA

TrEMBL top hitse value%identityAlignment
A0A0A0KUI5 Ribosomal_L18e/L15P domain-containing protein2.4e-2797.33Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
        L+ILADGEL+VKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA

A0A1S3BFG1 50S ribosomal protein L15, chloroplastic5.4e-2796Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
        L+ILADGEL+VKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQ+SA
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA

A0A5D3CCS9 50S ribosomal protein L155.4e-2796Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
        L+ILADGEL+VKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQ+SA
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA

A0A6J1G297 50S ribosomal protein L15, chloroplastic-like2.7e-2693.33Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
        L+ILADGEL+VKLNIKARAFSSAAKEKLEAAGC+LTVLPGRKKWVKPSVAKNLARAEEYFAKK+AAAAAAEQA+A
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA

A0A6J1HWB7 50S ribosomal protein L15, chloroplastic-like2.7e-2693.33Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA
        L+ILADGEL+VKLNIKARAFSSAAKEKLEAAGC+LTVLPGRKKWVKPSVAKNLARAEEYFAKK+AAAAAAEQA+A
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA

SwissProt top hitse value%identityAlignment
P22798 50S ribosomal protein L15, chloroplastic4.7e-2070.27Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQAS
        L+IL +GEL+ KL IKARAFS +AKEKLEAAGCS+TVLPGRKK++K SV KNLARA+EYFAKK+AA+A+  +++
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQAS

P25873 50S ribosomal protein L15, chloroplastic1.5e-2178.57Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAA
        L+IL  GEL++KL  KARAFS+ AKEKLEA+GC+LTVLPGRKKWVKPSVAKN ARA+EYFAKK+AAAA A
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAA

P31165 50S ribosomal protein L15, chloroplastic (Fragment)1.5e-2178.08Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQA
        L+ILADGEL+ KL IKA AFS++AKEKLE AGCSL VLPGRKKWVKPSVAKNLARAEEYFAKK+    A+E A
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQA

Arabidopsis top hitse value%identityAlignment
AT3G25920.1 ribosomal protein L151.0e-2278.57Show/hide
Query:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAA
        L+IL  GEL++KL  KARAFS+ AKEKLEA+GC+LTVLPGRKKWVKPSVAKN ARA+EYFAKK+AAAA A
Subjt:  LQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTTATCANGCTTAACTTTGTCTTTCCTTCAGATTTTAGCGGATGGAGAGCTGAATGTGAAGCTAAATATCAAAGCTCGGGCTTTTTCATCAGCAGCAAAAGAGAA
GCTTGAAGCTGCTGGCTGCTCCCTTACTGTATTACCTGGACGAAAGAAGTGGGTTAAGCCATCAGTGGCTAAGAACCTCGCACGTGCGGAGGAATACTTTGCAAAGAAGA
AGGCTGCGGCAGCTGCTGCAGAACAGGCTTCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATTTATCANGCTTAACTTTGTCTTTCCTTCAGATTTTAGCGGATGGAGAGCTGAATGTGAAGCTAAATATCAAAGCTCGGGCTTTTTCATCAGCAGCAAAAGAGAA
GCTTGAAGCTGCTGGCTGCTCCCTTACTGTATTACCTGGACGAAAGAAGTGGGTTAAGCCATCAGTGGCTAAGAACCTCGCACGTGCGGAGGAATACTTTGCAAAGAAGA
AGGCTGCGGCAGCTGCTGCAGAACAGGCTTCTGCTTGA
Protein sequenceShow/hide protein sequence
MYLSXLTLSFLQILADGELNVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKKAAAAAAEQASA