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Lsi04G002490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G002490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranslocase subunit seca
Genome locationchr04:2544868..2545514
RNA-Seq ExpressionLsi04G002490
SyntenyLsi04G002490
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601286.1 hypothetical protein SDJN03_06519, partial [Cucurbita argyrosperma subsp. sororia]1.6e-6778.16Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP
        DQLVCPKPRR +N   V V GHADSSLRWN SHQVEQID+A GPDLLDFLLT+                        GCSVDQSFTQLASSPPFLCGSPP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP

Query:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        SRVANPLIQDARF DEKFIPFAPIASPSGQLSPST+SRKGGRVRASFGNKPTVRIEGFDC DRDRQNCSIPAFA
Subjt:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA

XP_004135095.1 uncharacterized protein LOC101219538 [Cucumis sativus]2.7e-6777.59Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP
        DQLVCPKPRR T      VN H+D+SLRWN SHQVE ID+AAGPDLLDFLLTK                        GCSVDQSFTQLASSPPFLCGSPP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP

Query:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        SRVANPLIQDARFR+EKFIPF PIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
Subjt:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA

XP_008446603.1 PREDICTED: uncharacterized protein LOC103489287 [Cucumis melo]2.7e-6777.59Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP
        DQLVCPKPRR T      VN H+D+SLRWN SHQVE ID+AAGPDLLDFLLTK                        GCSVDQSFTQLASSPPFLCGSPP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP

Query:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        SRVANPLIQDARFR+EKFIPF PIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
Subjt:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA

XP_022957437.1 uncharacterized protein LOC111458833 [Cucurbita moschata]1.6e-6778.16Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP
        DQLVCPKPRR +N   V V GHADSSLRWN SHQVEQID+A GPDLLDFLLT+                        GCSVDQSFTQLASSPPFLCGSPP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP

Query:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        SRVANPLIQDARF DEKFIPFAPIASPSGQLSPST+SRKGGRVRASFGNKPTVRIEGFDC DRDRQNCSIPAFA
Subjt:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA

XP_038893407.1 uncharacterized protein LOC120082204 [Benincasa hispida]4.7e-7281.61Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP
        DQLVCPKPRR TN+LNVAVNGHAD+SLRWN SHQVEQID+AAGPDLLDFLLTK                        G SVDQSFTQLASSPPFLCGSPP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP

Query:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        SRVANPLIQDARF +EKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
Subjt:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA

TrEMBL top hitse value%identityAlignment
A0A0A0KWF7 Uncharacterized protein1.3e-6777.59Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP
        DQLVCPKPRR T      VN H+D+SLRWN SHQVE ID+AAGPDLLDFLLTK                        GCSVDQSFTQLASSPPFLCGSPP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP

Query:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        SRVANPLIQDARFR+EKFIPF PIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
Subjt:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA

A0A1S3BG95 uncharacterized protein LOC1034892871.3e-6777.59Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP
        DQLVCPKPRR T      VN H+D+SLRWN SHQVE ID+AAGPDLLDFLLTK                        GCSVDQSFTQLASSPPFLCGSPP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP

Query:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        SRVANPLIQDARFR+EKFIPF PIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
Subjt:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA

A0A5D3CB96 Uncharacterized protein1.3e-6777.59Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP
        DQLVCPKPRR T      VN H+D+SLRWN SHQVE ID+AAGPDLLDFLLTK                        GCSVDQSFTQLASSPPFLCGSPP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP

Query:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        SRVANPLIQDARFR+EKFIPF PIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
Subjt:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA

A0A6J1GZ47 uncharacterized protein LOC1114588337.6e-6878.16Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP
        DQLVCPKPRR +N   V V GHADSSLRWN SHQVEQID+A GPDLLDFLLT+                        GCSVDQSFTQLASSPPFLCGSPP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP

Query:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        SRVANPLIQDARF DEKFIPFAPIASPSGQLSPST+SRKGGRVRASFGNKPTVRIEGFDC DRDRQNCSIPAFA
Subjt:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA

A0A6J1JI50 uncharacterized protein LOC1114845403.8e-6777.59Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP
        DQLVCPKPRR +N   V V GHADSSLRWN SHQVEQID+A GPDLLDFLLT+                        GCSVDQSFTQLASSPPFLCGSPP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP

Query:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        SRVANPLIQDARF DEKFIP APIASPSGQLSPST+SRKGGRVRASFGNKPTVRIEGFDC DRDRQNCSIPAFA
Subjt:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G13390.1 unknown protein2.5e-2338.55Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPP-FLCGSP
        D ++CPKPRR       A+N H+  SLRW  +HQ+E  +  +G ++LDF+LTK                        G   +Q  T+   +PP F  GSP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPP-FLCGSP

Query:  PSRVANPLIQDARFRDEKFIPFAPIASP--SGQLSPSTSSRKGGRVRA--SFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        PSRV+NPL +D+ FR+E  +  +P  S   + +  P +S R G  V A  SFGN P VR+ GFDC DR   N SI   A
Subjt:  PSRVANPLIQDARFRDEKFIPFAPIASP--SGQLSPSTSSRKGGRVRA--SFGNKPTVRIEGFDCLDRDRQNCSIPAFA

AT1G13390.2 unknown protein2.5e-2338.55Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPP-FLCGSP
        D ++CPKPRR       A+N H+  SLRW  +HQ+E  +  +G ++LDF+LTK                        G   +Q  T+   +PP F  GSP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPP-FLCGSP

Query:  PSRVANPLIQDARFRDEKFIPFAPIASP--SGQLSPSTSSRKGGRVRA--SFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        PSRV+NPL +D+ FR+E  +  +P  S   + +  P +S R G  V A  SFGN P VR+ GFDC DR   N SI   A
Subjt:  PSRVANPLIQDARFRDEKFIPFAPIASP--SGQLSPSTSSRKGGRVRA--SFGNKPTVRIEGFDCLDRDRQNCSIPAFA

AT1G68490.1 unknown protein2.3e-3247.49Show/hide
Query:  LVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSP-PFLCGSPPS
        +VCPKPRR     N   + H   SLR   SHQ+E  +  A  D+LD +LTK                       DG   +Q   Q+  SP PFLCGSPPS
Subjt:  LVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSP-PFLCGSPPS

Query:  RVANPLIQDARFRDEKFIPFAPIASPSGQLSP-----STSSRKGG-RVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA
        RVANPL QDARFRDE  +  + +  P   L P     S+S RKGG  VR +FGN P VR+EGFDCLDRD +NCSIPA A
Subjt:  RVANPLIQDARFRDEKFIPFAPIASPSGQLSP-----STSSRKGG-RVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA

AT3G02555.1 unknown protein1.9e-2342.29Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP
        D +VCPKPRR  N +           L ++ S   +  D  AG DLLD    K                             +S +  + SPPF  GSPP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPP

Query:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKP-TVRIEGFDCLDRDRQNCSIPAFA
        SR ANPL QDARF DEK    +P  SP   L PS S  K G  R  FG KP TVR+EGFDCL+RDR N SIPA A
Subjt:  SRVANPLIQDARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKP-TVRIEGFDCLDRDRQNCSIPAFA

AT5G16110.1 unknown protein4.6e-2541.62Show/hide
Query:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQI-DLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSP
        D +VCPKPRR     N  +       LR + S     + D  AG +LL+                      ++  + D  ++ Q    L+SSPP+  GSP
Subjt:  DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQI-DLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSP

Query:  PSRVANPLIQDARFRDEKFIPFAPIA------SPSGQLSPSTSSRKG---GRVRASFG-NKPTVRIEGFDCLDRDRQNCSIPAFA
        PSR ANPL QDARFRDEK  P +P +      S +G  SPS+SS      G VR  FG N P VR+EGFDCL+RDRQN SIPA A
Subjt:  PSRVANPLIQDARFRDEKFIPFAPIA------SPSGQLSPSTSSRKG---GRVRASFG-NKPTVRIEGFDCLDRDRQNCSIPAFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATCAACTTGTCTGCCCTAAACCACGCCGTTTCACCAATAATCTCAACGTCGCCGTCAACGGCCACGCCGACAGCTCCCTCCGGTGGAATCGAAGTCATCAAGTTGAACA
AATTGACCTGGCAGCCGGACCGGATCTGCTGGACTTCCTCCTGACAAAGTTTCTTCCGATCATTAAATTAATATCGGAGTTTATACTGTATAGCTTCCTTTTGGTTAACG
ATCGTGTGGATGGTTGCAGCGTGGACCAATCGTTTACGCAGTTGGCTTCGTCGCCCCCGTTTTTATGTGGGTCTCCGCCGAGCAGAGTAGCCAACCCATTGATTCAGGAC
GCTCGATTTAGGGATGAAAAATTCATCCCCTTTGCTCCGATTGCTTCACCGTCAGGTCAGTTGTCGCCCTCTACATCCTCTAGGAAAGGAGGCCGTGTAAGGGCGAGTTT
TGGGAACAAACCAACGGTGAGGATTGAGGGTTTTGATTGCCTTGACAGGGATAGGCAAAATTGCAGCATCCCTGCTTTCGCC
mRNA sequenceShow/hide mRNA sequence
GATCAACTTGTCTGCCCTAAACCACGCCGTTTCACCAATAATCTCAACGTCGCCGTCAACGGCCACGCCGACAGCTCCCTCCGGTGGAATCGAAGTCATCAAGTTGAACA
AATTGACCTGGCAGCCGGACCGGATCTGCTGGACTTCCTCCTGACAAAGTTTCTTCCGATCATTAAATTAATATCGGAGTTTATACTGTATAGCTTCCTTTTGGTTAACG
ATCGTGTGGATGGTTGCAGCGTGGACCAATCGTTTACGCAGTTGGCTTCGTCGCCCCCGTTTTTATGTGGGTCTCCGCCGAGCAGAGTAGCCAACCCATTGATTCAGGAC
GCTCGATTTAGGGATGAAAAATTCATCCCCTTTGCTCCGATTGCTTCACCGTCAGGTCAGTTGTCGCCCTCTACATCCTCTAGGAAAGGAGGCCGTGTAAGGGCGAGTTT
TGGGAACAAACCAACGGTGAGGATTGAGGGTTTTGATTGCCTTGACAGGGATAGGCAAAATTGCAGCATCCCTGCTTTCGCC
Protein sequenceShow/hide protein sequence
DQLVCPKPRRFTNNLNVAVNGHADSSLRWNRSHQVEQIDLAAGPDLLDFLLTKFLPIIKLISEFILYSFLLVNDRVDGCSVDQSFTQLASSPPFLCGSPPSRVANPLIQD
ARFRDEKFIPFAPIASPSGQLSPSTSSRKGGRVRASFGNKPTVRIEGFDCLDRDRQNCSIPAFA