; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G002740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G002740
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr04:2791309..2795353
RNA-Seq ExpressionLsi04G002740
SyntenyLsi04G002740
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB3501364.1 unnamed protein product [Digitaria exilis]5.2e-0941.53Show/hide
Query:  LPALCKAEQNSKFLSFNMSNSDIHIKLGKTLKSSTLNNPFAEGLHHGWSRFVPEGNANRQYVSETANVSGERGGWTRNFSDLVLDSPPKNGCIKMLPLTT
        LPAL  A   S   S  MS SD H + G    S ++++  + GLH GWSR  P G+A RQ          ERGG    FSD V  SPPK G  +  PL+T
Subjt:  LPALCKAEQNSKFLSFNMSNSDIHIKLGKTLKSSTLNNPFAEGLHHGWSRFVPEGNANRQYVSETANVSGERGGWTRNFSDLVLDSPPKNGCIKMLPLTT

Query:  NGFKTTAPEAVVLPPSPA
        +G   TAP     PP P+
Subjt:  NGFKTTAPEAVVLPPSPA
KGN52063.1 hypothetical protein Csa_008241 [Cucumis sativus]6.6e-0477.78Show/hide
Query:  MEGSEGPKFVLSFTSLSPLVSHQPSTNVESVLLLKD
        + GSEGPKFVLSFTSLS L SHQ  TNVESV LLK+
Subjt:  MEGSEGPKFVLSFTSLSPLVSHQPSTNVESVLLLKD
TrEMBL top hitse value%identityAlignment
A0A0A0KR51 Uncharacterized protein3.2e-0477.78Show/hide
Query:  MEGSEGPKFVLSFTSLSPLVSHQPSTNVESVLLLKD
        + GSEGPKFVLSFTSLS L SHQ  TNVESV LLK+
Subjt:  MEGSEGPKFVLSFTSLSPLVSHQPSTNVESVLLLKD
A0A2P2QAQ7 Uncharacterized protein1.9e-0444.62Show/hide
Query:  MEIYNQRQ--LLLALC-WNIETSPNVGQFIHNYIPRSNTELWRQCIRDTWNYLGSFHIPISVNSN
        MEI+NQR+  ++  +C WNI+T PN+   +++Y+  S+ EL  Q   +T N LGSFH+ I V+SN
Subjt:  MEIYNQRQ--LLLALC-WNIETSPNVGQFIHNYIPRSNTELWRQCIRDTWNYLGSFHIPISVNSN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAAGTGAGGGCCCCAAGTTTGTCCTTAGTTTCACTTCATTATCACCCTTAGTGTCGCATCAGCCATCCACTAATGTAGAGTCAGTCCTCCTTCTCAAAGATTG
TGCATCTAAAAGGGTGAGACGAAAAAAAGCAGAGACAATTTCATTGCTGCCTAAAAAGTTTGCTGCCCTAGAAGACAAGAGCTTAAGAAAAGTACAGAAGAGCTCAAAAA
CGCTAAAGCCTAAAGCTACAGTTCCAGTTTATTTCTTCCTGTGGGAACTGCATCTCACCGGTGGAGGCTTACCGGCTCTATGTAAAGCAGAGCAAAACTCCAAGTTCCTA
TCTTTCAATATGTCCAATTCTGATATACATATCAAACTAGGCAAAACCCTCAAATCCTCCACCTTAAACAATCCTTTTGCCGAAGGATTGCACCATGGGTGGTCACGGTT
TGTCCCGGAAGGCAATGCCAACCGCCAGTACGTATCAGAAACTGCCAACGTCAGTGGCGAACGAGGAGGTTGGACAAGAAACTTCTCTGACTTGGTCCTTGACTCTCCAC
CAAAAAATGGTTGTATCAAAATGTTACCTTTAACAACTAACGGCTTCAAGACCACAGCTCCAGAAGCAGTGGTCTTACCACCAAGTCCGGCGGCTACATTGAAGGCTATG
TTGCCACCGGCACTATCACCACTAAGCCAGGAACTCATGGTAGCAACTCCAAGCGGCCGAGCCGACACAAAACCCACCTCCATGGAAATATACAATCAAAGGCAGCTTCT
CCTGGCACTGTGTTGGAATATAGAAACGAGCCCAAATGTTGGTCAGTTTATCCACAACTACATCCCAAGAAGTAACACCGAGCTCTGGCGGCAATGCATTAGAGACACAT
GGAACTATTTGGGGTCTTTCCACATACCCATTTCCGTAAACTCTAATCAGGCCATCAATCTCCTCAACCAACACGTCATGTTGATTAAAGCCATTACCATCCACCACGGC
CAACACGCTATAAGAACTGTTGCTGAACATGCACCAGCCATCACAATTGTTGCCCCCCAGAAAGAACTTCGGTACCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGAAGTGAGGGCCCCAAGTTTGTCCTTAGTTTCACTTCATTATCACCCTTAGTGTCGCATCAGCCATCCACTAATGTAGAGTCAGTCCTCCTTCTCAAAGATTG
TGCATCTAAAAGGGTGAGACGAAAAAAAGCAGAGACAATTTCATTGCTGCCTAAAAAGTTTGCTGCCCTAGAAGACAAGAGCTTAAGAAAAGTACAGAAGAGCTCAAAAA
CGCTAAAGCCTAAAGCTACAGTTCCAGTTTATTTCTTCCTGTGGGAACTGCATCTCACCGGTGGAGGCTTACCGGCTCTATGTAAAGCAGAGCAAAACTCCAAGTTCCTA
TCTTTCAATATGTCCAATTCTGATATACATATCAAACTAGGCAAAACCCTCAAATCCTCCACCTTAAACAATCCTTTTGCCGAAGGATTGCACCATGGGTGGTCACGGTT
TGTCCCGGAAGGCAATGCCAACCGCCAGTACGTATCAGAAACTGCCAACGTCAGTGGCGAACGAGGAGGTTGGACAAGAAACTTCTCTGACTTGGTCCTTGACTCTCCAC
CAAAAAATGGTTGTATCAAAATGTTACCTTTAACAACTAACGGCTTCAAGACCACAGCTCCAGAAGCAGTGGTCTTACCACCAAGTCCGGCGGCTACATTGAAGGCTATG
TTGCCACCGGCACTATCACCACTAAGCCAGGAACTCATGGTAGCAACTCCAAGCGGCCGAGCCGACACAAAACCCACCTCCATGGAAATATACAATCAAAGGCAGCTTCT
CCTGGCACTGTGTTGGAATATAGAAACGAGCCCAAATGTTGGTCAGTTTATCCACAACTACATCCCAAGAAGTAACACCGAGCTCTGGCGGCAATGCATTAGAGACACAT
GGAACTATTTGGGGTCTTTCCACATACCCATTTCCGTAAACTCTAATCAGGCCATCAATCTCCTCAACCAACACGTCATGTTGATTAAAGCCATTACCATCCACCACGGC
CAACACGCTATAAGAACTGTTGCTGAACATGCACCAGCCATCACAATTGTTGCCCCCCAGAAAGAACTTCGGTACCCATAA
Protein sequenceShow/hide protein sequence
MEGSEGPKFVLSFTSLSPLVSHQPSTNVESVLLLKDCASKRVRRKKAETISLLPKKFAALEDKSLRKVQKSSKTLKPKATVPVYFFLWELHLTGGGLPALCKAEQNSKFL
SFNMSNSDIHIKLGKTLKSSTLNNPFAEGLHHGWSRFVPEGNANRQYVSETANVSGERGGWTRNFSDLVLDSPPKNGCIKMLPLTTNGFKTTAPEAVVLPPSPAATLKAM
LPPALSPLSQELMVATPSGRADTKPTSMEIYNQRQLLLALCWNIETSPNVGQFIHNYIPRSNTELWRQCIRDTWNYLGSFHIPISVNSNQAINLLNQHVMLIKAITIHHG
QHAIRTVAEHAPAITIVAPQKELRYP