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Lsi04G003030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G003030
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiongeranyl diphosphate phosphohydrolase-like
Genome locationchr04:3058008..3058360
RNA-Seq ExpressionLsi04G003030
SyntenyLsi04G003030
Gene Ontology termsGO:0006203 - dGTP catabolic process (biological process)
GO:0005829 - cytosol (cellular component)
GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity (molecular function)
InterPro domainsIPR000086 - NUDIX hydrolase domain
IPR015797 - NUDIX hydrolase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034516.1 nudix hydrolase 1-like [Cucumis melo var. makuwa]3.0e-4792.78Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
        ENFEECA RE+KEETGLDI KIEFLKVTNNLFMDQP PAHYVVVFVRAVL D TQTPLNLEPEKCDGW WYEWDNLPQPLFGPIKKMVMDGFNPFPQ
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFPQ

XP_004135122.1 geranyl diphosphate phosphohydrolase [Cucumis sativus]2.8e-4589.58Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFP
        ENFEECA RE+KEETGLDIEKIEFLKVTNNLFMDQP PAHYVVVFVRAVL D TQTP+NLEPEKCDGW WYEWD LP PLFGPIKKMV DGFNPFP
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFP

XP_008446534.1 PREDICTED: nudix hydrolase 1-like [Cucumis melo]3.0e-4792.78Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
        ENFEECA RE+KEETGLDI KIEFLKVTNNLFMDQP PAHYVVVFVRAVL D TQTPLNLEPEKCDGW WYEWDNLPQPLFGPIKKMVMDGFNPFPQ
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFPQ

XP_022945655.1 geranyl diphosphate phosphohydrolase-like [Cucurbita moschata]1.1e-4489.47Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPF
        ENFEECAAREMKEETGLDIEK+EFLKVTNNLFMDQP+PAHYVVVFVRAVLAD  QTPLNLEP+KC GW WYEWD+LPQPLFGPIK MVM+GFNPF
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPF

XP_038892917.1 geranyl diphosphate phosphohydrolase [Benincasa hispida]7.8e-4893.81Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
        ENFEECAARE+KEETGLDIEKIEFLKVTNNLF+DQP  AHYVVVFVRAVLAD TQTPLNLEPEKCDGW WYEWDNLPQPLFGPIKKMVMDGFNPFPQ
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFPQ

TrEMBL top hitse value%identityAlignment
A0A0A0KR28 Nudix hydrolase domain-containing protein1.3e-4589.58Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFP
        ENFEECA RE+KEETGLDIEKIEFLKVTNNLFMDQP PAHYVVVFVRAVL D TQTP+NLEPEKCDGW WYEWD LP PLFGPIKKMV DGFNPFP
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFP

A0A1S3BFY2 nudix hydrolase 1-like1.4e-4792.78Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
        ENFEECA RE+KEETGLDI KIEFLKVTNNLFMDQP PAHYVVVFVRAVL D TQTPLNLEPEKCDGW WYEWDNLPQPLFGPIKKMVMDGFNPFPQ
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFPQ

A0A5D3CCL5 Nudix hydrolase 1-like1.4e-4792.78Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFPQ
        ENFEECA RE+KEETGLDI KIEFLKVTNNLFMDQP PAHYVVVFVRAVL D TQTPLNLEPEKCDGW WYEWDNLPQPLFGPIKKMVMDGFNPFPQ
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFPQ

A0A6J1D5X4 geranyl diphosphate phosphohydrolase2.5e-4487.5Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFP
        ENFEECAAREMKEETGLDIEKIEFLKVTNNLF++QP PAHYVVVFVRAVLAD  QTP NLEPEKC+GW WYEW NLP PLFGPIK MV+DGFNPFP
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFP

A0A6J1G1K2 geranyl diphosphate phosphohydrolase-like5.1e-4589.47Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPF
        ENFEECAAREMKEETGLDIEK+EFLKVTNNLFMDQP+PAHYVVVFVRAVLAD  QTPLNLEP+KC GW WYEWD+LPQPLFGPIK MVM+GFNPF
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPF

SwissProt top hitse value%identityAlignment
M4I1C6 Geranyl diphosphate phosphohydrolase7.6e-3871.88Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFP
        E+FEECAARE+KEET LDI KIE L VTNNLF+D+  P+ YV VF+RAVLAD  Q P N+EPE CDGWGWYEWDNLP+PLF P+  +V DGFNPFP
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFP

Q8BG93 Nucleotide triphosphate diphosphatase NUDT152.3e-1034.65Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLT--QTPLNLEPEKCDGWGWYEWDNLP--QPLFGPIKKMVMDGFNPFP
        E +EECA RE  EE GL ++ + F  V N+ F+++ +  HYV + ++  + D+T    P N+EPEK + W W  W+  P    LF  ++ +   G++PF 
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLT--QTPLNLEPEKCDGWGWYEWDNLP--QPLFGPIKKMVMDGFNPFP

Query:  Q
        +
Subjt:  Q

Q9CA40 Nudix hydrolase 18.7e-3463.16Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPF
        E+FEECAARE+ EETGL IEK++ L VTNN+F + P+P+HYV V +RAVL D +Q P N+EPEKC+GW WY+W+NLP+PLF P++K+   GFNPF
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPF

Q9NV35 Nucleotide triphosphate diphosphatase NUDT153.0e-1033.66Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLT--QTPLNLEPEKCDGWGWYEWDNLP--QPLFGPIKKMVMDGFNPFP
        E +EECA RE  EE  L ++ + F  V N+    +    HYV + ++  + D+T    P N+EPEK + W W  W+ LP    LF  ++ +   G++PF 
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLT--QTPLNLEPEKCDGWGWYEWDNLP--QPLFGPIKKMVMDGFNPFP

Query:  Q
        +
Subjt:  Q

Arabidopsis top hitse value%identityAlignment
AT1G68760.1 nudix hydrolase 16.2e-3563.16Show/hide
Query:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPF
        E+FEECAARE+ EETGL IEK++ L VTNN+F + P+P+HYV V +RAVL D +Q P N+EPEKC+GW WY+W+NLP+PLF P++K+   GFNPF
Subjt:  ENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGAGAATTTTGAAGAATGTGCAGCAAGAGAAATGAAAGAAGAGACGGGTTTAGATATCGAGAAGATTGAGTTTCTAAAAGTGACGAATAATTTGTTTATGGATCA
ACCAAGTCCGGCCCATTATGTGGTGGTGTTCGTACGAGCAGTACTGGCAGATCTGACACAAACTCCACTGAATCTTGAGCCTGAAAAATGTGATGGTTGGGGTTGGTATG
AATGGGACAATCTGCCACAACCGCTATTTGGTCCCATAAAAAAAATGGTCATGGATGGCTTCAATCCTTTCCCACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGAGAATTTTGAAGAATGTGCAGCAAGAGAAATGAAAGAAGAGACGGGTTTAGATATCGAGAAGATTGAGTTTCTAAAAGTGACGAATAATTTGTTTATGGATCA
ACCAAGTCCGGCCCATTATGTGGTGGTGTTCGTACGAGCAGTACTGGCAGATCTGACACAAACTCCACTGAATCTTGAGCCTGAAAAATGTGATGGTTGGGGTTGGTATG
AATGGGACAATCTGCCACAACCGCTATTTGGTCCCATAAAAAAAATGGTCATGGATGGCTTCAATCCTTTCCCACAATGA
Protein sequenceShow/hide protein sequence
MRENFEECAAREMKEETGLDIEKIEFLKVTNNLFMDQPSPAHYVVVFVRAVLADLTQTPLNLEPEKCDGWGWYEWDNLPQPLFGPIKKMVMDGFNPFPQ