CuGenDBv2

Gene ID	Lsi04G003120
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	importin-9
Genome location	chr04:3165832..3167345
RNA-Seq Expression	Lsi04G003120
Synteny	Lsi04G003120
Gene Ontology terms	GO:0006606 - protein import into nucleus (biological process) GO:0005635 - nuclear envelope (cellular component) GO:0005829 - cytosol (cellular component)
InterPro domains	IPR011989 - Armadillo-like helical IPR016024 - Armadillo-type fold

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601339.1 Importin-9, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-56

69.59

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Query:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFL-----
        MANVIDQDQQWLIN LSATLDPN EVRSFAEASLNQASLQP           GFGVALSKVAANRELP GLRQISFVV AIKILRFSVLFAS  L     
Subjt:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFL-----

Query:  -FYSRNCCLKHCPLLI--FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE
          +     L   P +    KA IR+LLL TLDDSHRKICTAISMAVASIAIYDWPEEWPELLP LL+LMNN+IN+NG H   LR +  +   L+
Subjt:  -FYSRNCCLKHCPLLI--FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE

KAG7032125.1 Importin-9, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-53

65.33

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Query:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQP-----------VDESHFRLVG--VGFGVALSKVAANRELPAGLRQISFVVIAIKILRFS
        MANVIDQDQQWLIN LSATLDPN EVRSFAEASLNQASLQP           V    FRL    +GFGVALSKVAANRELP GLRQISFVV AIKILRFS
Subjt:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQP-----------VDESHFRLVG--VGFGVALSKVAANRELPAGLRQISFVVIAIKILRFS

Query:  VLFASRFLFYSRNCCLKHCPLLIFKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE
                                 A IR+LLL TLDDSHRKICTAISMAVASIAIYDWPEEWPELLP LL+LMNN+IN+NG H   LR +  +   L+
Subjt:  VLFASRFLFYSRNCCLKHCPLLIFKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE

TYK09061.1 importin-9 isoform X1 [Cucumis melo var. makuwa]

8.3e-54

66.84

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Query:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN
        MANVIDQDQQWLINCLSATLDPN EVRSFAEASLNQASLQP           GFGVALSKVAANRELP GLRQISFV+  +          + + +   +
Subjt:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN

Query:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE
           +H  + I  KAVIRKLLLFTLDDSHRKICTAISMAVASIA YDWPEEWPELLP LLDLMNN+INMNG H   LR +  +   L+
Subjt:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE

XP_008446518.1 PREDICTED: importin-9 isoform X1 [Cucumis melo]

3.0e-51

65.78

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Query:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN
        MANVIDQDQQWLINCLSATLDPN EVRSFAEASLNQASLQP           GFGVALSKVAANRELP GLRQ++ V++   I +          +   +
Subjt:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN

Query:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE
           +H  + I  KAVIRKLLLFTLDDSHRKICTAISMAVASIA YDWPEEWPELLP LLDLMNN+INMNG H   LR +  +   L+
Subjt:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE

XP_038892157.1 importin-9 [Benincasa hispida]

3.0e-51

64.71

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Query:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN
        MAN++DQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQP           GFGVALSKV ANRELP GLRQ++ V++   I +          +   +
Subjt:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN

Query:  CCLKHCPLL-IFKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE
           +H  +    KAVIRKLLL TLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNN+INMNG H   LR +  +   L+
Subjt:  CCLKHCPLL-IFKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQZ8 Importin N-terminal domain-containing protein

4.2e-51

65.24

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Query:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN
        MANVIDQDQQWLINCLSATLDPN EVRSFAEASLNQASLQP           GFGVALSKVAANRELP GLRQ++ V++   I +          +   +
Subjt:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN

Query:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE
           +H  + I  KAVIRKLLLFTLDDSHRKICTAIS+AVASIA YDWPEEWPELLP LLDLMNN+INMNG H   LR +  +   L+
Subjt:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE

A0A1S3BF85 importin-9 isoform X1

1.4e-51

65.78

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Query:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN
        MANVIDQDQQWLINCLSATLDPN EVRSFAEASLNQASLQP           GFGVALSKVAANRELP GLRQ++ V++   I +          +   +
Subjt:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN

Query:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE
           +H  + I  KAVIRKLLLFTLDDSHRKICTAISMAVASIA YDWPEEWPELLP LLDLMNN+INMNG H   LR +  +   L+
Subjt:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE

A0A1S3BFX2 importin-9 isoform X2

1.4e-51

65.78

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Query:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN
        MANVIDQDQQWLINCLSATLDPN EVRSFAEASLNQASLQP           GFGVALSKVAANRELP GLRQ++ V++   I +          +   +
Subjt:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN

Query:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE
           +H  + I  KAVIRKLLLFTLDDSHRKICTAISMAVASIA YDWPEEWPELLP LLDLMNN+INMNG H   LR +  +   L+
Subjt:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE

A0A5A7SZ00 Importin-9 isoform X1

6.7e-49

64.71

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Query:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN
        MANVIDQDQQWLINCLSATLDPN EVRSFAEASLNQASLQP           GFGVALSKVAANRELP GL        A+ + +F      +  +   +
Subjt:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN

Query:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE
           +H  + I  KAVIRKLLLFTLDDSHRKICTAISMAVASIA YDWPEEWPELLP LLDLMNN+INMNG H   LR +  +   L+
Subjt:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE

A0A5D3CB26 Importin-9 isoform X1

4.0e-54

66.84

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Query:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN
        MANVIDQDQQWLINCLSATLDPN EVRSFAEASLNQASLQP           GFGVALSKVAANRELP GLRQISFV+  +          + + +   +
Subjt:  MANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRN

Query:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE
           +H  + I  KAVIRKLLLFTLDDSHRKICTAISMAVASIA YDWPEEWPELLP LLDLMNN+INMNG H   LR +  +   L+
Subjt:  CCLKHCPLLI-FKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE

SwissProt top hits

e value

%identity

Alignment

Q91YE6 Importin-9

1.1e-05

28.29

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Query:  LINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRNCCLKHCPLLIF
        L++ L+  L P QEVR+ AE    Q  +  V E         FGV L+++  + +    +RQ++ V++   +       + +F            P    
Subjt:  LINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRNCCLKHCPLLIF

Query:  KA--VIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLM
        +A  VIR+LL   L +S  K+ ++++ AV++IA +DWPE WP+L   L++++
Subjt:  KA--VIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLM

Q96P70 Importin-9

1.1e-05

28.29

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Query:  LINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRNCCLKHCPLLIF
        L++ L+  L P QEVR+ AE    Q  +  V E         FGV L+++  + +    +RQ++ V++   +       + +F            P    
Subjt:  LINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRNCCLKHCPLLIF

Query:  KA--VIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLM
        +A  VIR+LL   L +S  K+ ++++ AV++IA +DWPE WP+L   L++++
Subjt:  KA--VIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLM

Arabidopsis top hits

e value

%identity

Alignment

AT1G26170.1 ARM repeat superfamily protein

5.6e-40

51.89

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Query:  VIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRNCCL
        V+DQDQQWL+ CLSA+LDPNQ VRSFAE SLNQASLQP           GFG AL +VAAN++L  GLRQ++ V++   I +           +  N   
Subjt:  VIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRNCCL

Query:  KHCPLLIF--KAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE
           PL+    KA+IR  LL +LDDSHRKICTAISM ++SIA YDWPEEWPEL+P+LL L+++  N NG H A LR +  +   L+
Subjt:  KHCPLLIF--KAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLE

Sequences

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CDS sequence

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ATGATGGCGAATGTGATTGATCAGGATCAGCAATGGCTTATCAATTGCTTGTCGGCCACTCTCGACCCCAACCAGGAGGTTCGCTCATTTGCAGAAGCATCGCTAAATCA
GGCATCTCTTCAACCAGTAGACGAATCACATTTCCGCCTCGTCGGCGTAGGTTTTGGGGTTGCATTATCCAAAGTTGCTGCCAACAGGGAGCTTCCTGCAGGATTGCGCC
AGATATCCTTTGTTGTCATTGCTATTAAGATTCTTCGTTTTTCCGTGTTATTTGCTTCTCGTTTCCTTTTCTATTCTCGAAATTGCTGTTTGAAACACTGCCCTTTGCTC
ATCTTTAAGGCAGTCATTCGCAAGCTTCTTTTATTTACGTTGGATGATTCCCATAGAAAAATTTGTACAGCGATTAGTATGGCCGTGGCTTCAATTGCAATATATGATTG
GCCGGAGGAATGGCCCGAGCTATTGCCTTACCTCTTAGATTTGATGAATAATCAAATTAATATGAATGGTGATCATTTGGCAGATCTCAGATCGGTAGTCTTCATTGGAT
TTAGATTGGAGCATTCGGCTTTGGATTGA

mRNA sequence

Show/hide mRNA sequence

TTTTGTTGCCTGAACTCGGCTGGGCTGGCAATCAGTCATCCTACGCGCGCTTTTTACAGCCCACACTTGGAAGCAAGCGAGTAAACGCTGCGACAGTCGCAGAGCCGACC
AAAGTGAACTCTGAAACGGCGGAACAAACTCGGAAGGCTTTGCTCGGCGCTCGATGATGGCGAATGTGATTGATCAGGATCAGCAATGGCTTATCAATTGCTTGTCGGCC
ACTCTCGACCCCAACCAGGAGGTTCGCTCATTTGCAGAAGCATCGCTAAATCAGGCATCTCTTCAACCAGTAGACGAATCACATTTCCGCCTCGTCGGCGTAGGTTTTGG
GGTTGCATTATCCAAAGTTGCTGCCAACAGGGAGCTTCCTGCAGGATTGCGCCAGATATCCTTTGTTGTCATTGCTATTAAGATTCTTCGTTTTTCCGTGTTATTTGCTT
CTCGTTTCCTTTTCTATTCTCGAAATTGCTGTTTGAAACACTGCCCTTTGCTCATCTTTAAGGCAGTCATTCGCAAGCTTCTTTTATTTACGTTGGATGATTCCCATAGA
AAAATTTGTACAGCGATTAGTATGGCCGTGGCTTCAATTGCAATATATGATTGGCCGGAGGAATGGCCCGAGCTATTGCCTTACCTCTTAGATTTGATGAATAATCAAAT
TAATATGAATGGTGATCATTTGGCAGATCTCAGATCGGTAGTCTTCATTGGATTTAGATTGGAGCATTCGGCTTTGGATTGA

Protein sequence

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MMANVIDQDQQWLINCLSATLDPNQEVRSFAEASLNQASLQPVDESHFRLVGVGFGVALSKVAANRELPAGLRQISFVVIAIKILRFSVLFASRFLFYSRNCCLKHCPLL
IFKAVIRKLLLFTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLDLMNNQINMNGDHLADLRSVVFIGFRLEHSALD

Lsi04G003120 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome