CuGenDBv2

Gene ID	Lsi04G003330
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Genome location	chr04:3381172..3386992
RNA-Seq Expression	Lsi04G003330
Synteny	Lsi04G003330
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits	e value	%identity	Alignment
No hits found

TrEMBL top hits

e value

%identity

Alignment

A0A3Q7GE76 Uncharacterized protein

4.6e-15

47.68

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Query:  SRTAYLTSLSLYSKKLTSKGNMSKLKIRSMLNCFPLLILNRSLIASSTIASELAKDKAARATLIVAISLRSFHLSIVDFRALLELKALDTSFCPVTGQKI
        S  AYL  L L S K  S G    L+  ++L  F   +L +S IA S I+  +A+D AA A LI+A+S  SFH  IV F A L L+ L  SF P  G  I
Subjt:  SRTAYLTSLSLYSKKLTSKGNMSKLKIRSMLNCFPLLILNRSLIASSTIASELAKDKAARATLIVAISLRSFHLSIVDFRALLELKALDTSFCPVTGQKI

Query:  SSD-SSNSLSHSTIACLSYDTPVSKLTGSSMIFFVNGQMKVSKKASLNSDT
        SS   S+ L HS IA LSY TP+S +TGSS+IFFV GQ  VS + S+ SD+
Subjt:  SSD-SSNSLSHSTIACLSYDTPVSKLTGSSMIFFVNGQMKVSKKASLNSDT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGCTCACACTTCTGTCCACATCCACTTTGTCATCCACGAGCGTACAAATGGCGGACAAAGCTGCCTCAACTACTTCTTCGTTCTCATTGTCTAAACACGTCAATAGC
TTTTCAATTGCCTTCGCATGGACTAAACAGAATGTGTTTTGTGAAGAGCAAGCCCCTTTATGAACTGGGCATACTCGTAAGGGCTTGGATAGACTCGTGGATGCTGATGA
TAGTTTCTCCAACCCAATGGCGGATAGCTTTTGAACTTCATCACTTGATGCTTGGGAGCTTGGGCACGATGTTCTTGTTTGCAATAACGGTAAAGCTACTGATAAGGTTC
TCCACTTGGTCACTGGTATTGCAGAGTCTTTCTGCCATTGTGAAGCCCATGCAAGGAGACAGTGATATGAGCAGTTTTATTGCTGCAGCTCCAAGTTCTTCATCTGGACT
ACTGATGAAATATATGAGGGTATCACATGCTTCAGTGTTTTTTACACCCGAAACAAGGGTGTCCATTAGTTTTGGAGATTTTGTCGAGCATAATAGTATTCTGATGAGAC
TCATGCTAAATTTAGATTCATCTGGAGTTGAGTTCTTGAGCAAGTCGATAATTGTAGCCATGAGCGTTAACTTGAAGTGTCTCAAGATCAAGACTGGATTCGCATATATT
TGCCAGTATTTGAGTTGCATCTGCTTTTGGATCATTAAGTTCATCACAGATGGTACGAGTGAACATCTCTTCAGCCATGACTCGTACAGCTCCAGCTTTTGCAAGTGTTT
TACCATTAGGCCTGATGCTTATGTTGAGAGCGTGAGAATTTTACACTCACCTTCAGTAAGATGCCTTATGAGGGGTTCCATGAGTCCACCTTCTGCCATAAGCTTGATAT
TCGTTGGAGATTTCTCTAAGTTTCTCAAGGTTTCATCTGCCTTTTCTGAAGCAAATTCATCGGACCTTTTGTCCTTCATGATGATCAGCATTGAAATCCCCCCAGTTACT
GAACCAATTGGATCTGACAATAATTGGGATCTTGAAAGCTCAAACAACAGAAGCAGGGCTCTATCCCGAATGGACCTCTCTAGAACTGCATATCTAACATCTCTGTCTCT
GTACTCCAAGAAGTTAACGAGCAAAGGTAACATGTCAAAATTGAAGATCCGTTCTATGTTGAACTGCTTCCCTTTGCTGATACTCAACAGGTCTTTGATTGCCTCAAGCA
CCATTGCATCTGAACTGGCTAAAGACAAAGCGGCCCGGGCGACTTTGATTGTTGCTATCTCATTGCGTTCCTTCCATTTGTCTATTGTAGACTTCAGAGCTCTGTTGGAA
TTAAAAGCTTTGGACACAAGCTTTTGCCCTGTGACTGGGCAGAAAATTTCCTCGGATTCTTCAAACTCTTTAAGCCACTCAACAATTGCTTGTCTTTCATATGACACTCC
CGTTTCTAAGCTAACTGGATCGTCCATGATATTCTTTGTCAATGGACAGATGAAGGTCTCAAAGAAAGCTTCACTCAACTCCGATACAACTGGGGATTGTGTATTGTTTG
TGTCCCAGTCCATATCAATGGGGTATAGATCTTTCTCTATAACTTCTGAGATTGGAGGATTTCATCAAATGGCATTGGGTCTATTGCCTGCAATTCCGCAATGGCCAGAG
CTGCTCGATAAAATGCACTCTGTAGAATCTATGATTTCTGAGATGGAAGCTAAGATAAGTTCAGCCAAAGACAGTATTGGCTTTGTCGCCATTGCTCTGGACATAAATGG
AGTTGTTCCTCTCTCAGCTCATGGTGGCCATATACAGTACTTTGGGATCATACAATCATACGTCAAACGGACTGGTGCAACTCAAGAAAAGCGTTCACAGTTCTACCAAA
CTCTTCTGCGAGTACAAAAGTTTGAGGTACCAAGATTCAGGCTTGAAGCTGCTGCTTGTGATATGATCCCAAACCCCTGTAAATCCTTGTTAACTGGCTTCTTCTTGCTC
AATAATTATTCACAGACCAGCTCTATGCTTTCAAGTTTTAAAACCTTTCGAAGGCAAGGCAGAAAAACAAGAAACAAACAATTAACAGTTCCTACATACTGA

mRNA sequence

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Protein sequence

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MGSHFCPHPLCHPRAYKWRTKLPQLLLRSHCLNTSIAFQLPSHGLNRMCFVKSKPLYELGILVRAWIDSWMLMIVSPTQWRIAFELHHLMLGSLGTMFLFAITVKLLIRF
STWSLVLQSLSAIVKPMQGDSDMSSFIAAAPSSSSGLLMKYMRVSHASVFFTPETRVSISFGDFVEHNSILMRLMLNLDSSGVEFLSKSIIVAMSVNLKCLKIKTGFAYI
CQYLSCICFWIIKFITDGTSEHLFSHDSYSSSFCKCFTIRPDAYVESVRILHSPSVRCLMRGSMSPPSAISLIFVGDFSKFLKVSSAFSEANSSDLLSFMMISIEIPPVT
EPIGSDNNWDLESSNNRSRALSRMDLSRTAYLTSLSLYSKKLTSKGNMSKLKIRSMLNCFPLLILNRSLIASSTIASELAKDKAARATLIVAISLRSFHLSIVDFRALLE
LKALDTSFCPVTGQKISSDSSNSLSHSTIACLSYDTPVSKLTGSSMIFFVNGQMKVSKKASLNSDTTGDCVLFVSQSISMGYRSFSITSEIGGFHQMALGLLPAIPQWPE
LLDKMHSVESMISEMEAKISSAKDSIGFVAIALDINGVVPLSAHGGHIQYFGIIQSYVKRTGATQEKRSQFYQTLLRVQKFEVPRFRLEAAACDMIPNPCKSLLTGFFLL
NNYSQTSSMLSSFKTFRRQGRKTRNKQLTVPTY

Lsi04G003330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome