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Lsi04G003550 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G003550
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein CRABS CLAW
Genome locationchr04:3547540..3550695
RNA-Seq ExpressionLsi04G003550
SyntenyLsi04G003550
Gene Ontology termsGO:0048440 - carpel development (biological process)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR006780 - YABBY protein
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013095.1 Protein CRABS CLAW, partial [Cucurbita argyrosperma subsp. argyrosperma]6.4e-5370.35Show/hide
Query:  MSNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMA
        + +SEDKSSMDLVQPSDHLCYVKCNFC+TVLA                                          QSQVGFSNDIRKGASTSSSS+SSSMA
Subjt:  MSNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMA

Query:  NESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH
        NESPS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSA GSASGTH++
Subjt:  NESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH

XP_022944998.1 protein CRABS CLAW [Cucurbita moschata]8.4e-5371.18Show/hide
Query:  NSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE
        +SEDKSSMDLVQPSDHLCYVKCNFC+TVLA                                          QSQVGFSNDIRKGASTSSSS+SSSMANE
Subjt:  NSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE

Query:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH
        SPS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSA GSASGTH++
Subjt:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH

XP_023542830.1 protein CRABS CLAW [Cucurbita pepo subsp. pepo]4.2e-5270.59Show/hide
Query:  NSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE
        +SEDKSSMDLVQPSDHLCYVKCNFC+TVLA                                          QSQVGFS DIRKGASTSSSS+SSSMANE
Subjt:  NSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE

Query:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH
        SPS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSA GSASGTH++
Subjt:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH

XP_038893343.1 protein CRABS CLAW isoform X1 [Benincasa hispida]8.4e-5370.59Show/hide
Query:  SNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMAN
        SNS+DKSSMDLVQPS+HLCYVKCNFC+TVLA                                          QSQVGFSNDIRKGASTSS+STSSS+ N
Subjt:  SNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMAN

Query:  ESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHN
        ESPS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGS SGTHN
Subjt:  ESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHN

XP_038893344.1 protein CRABS CLAW isoform X2 [Benincasa hispida]9.3e-5270.24Show/hide
Query:  SNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN--------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANES
        SNS+DKSSMDLVQPS+HLCYVKCNFC+TVLA                                          QVGFSNDIRKGASTSS+STSSS+ NES
Subjt:  SNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN--------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANES

Query:  PSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHN
        PS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGS SGTHN
Subjt:  PSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHN

TrEMBL top hitse value%identityAlignment
A0A0A0KQW3 Uncharacterized protein8.8e-4866.86Show/hide
Query:  MSNSEDKSSM-DLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSND--IRKGASTSSSSTSS
        MSNSEDKSSM DLVQPS+H CYVKCNFC+TVLA                                          QSQVGFSN+  IRKGASTSS+ST+S
Subjt:  MSNSEDKSSM-DLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSND--IRKGASTSSSSTSS

Query:  SMANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH
        S+ N+SP  NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGS SGTHN+
Subjt:  SMANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH

A0A6J1D6X3 protein CRABS CLAW2.9e-5167.44Show/hide
Query:  MSNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMA
        MS+ + K+SMDLVQPS+HLCYV+CNFC+TVLA                                          Q+QVGFSNDIRKGASTSS+STSSSMA
Subjt:  MSNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMA

Query:  NESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH
        NESPS +FVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGS SGTHN+
Subjt:  NESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH

A0A6J1FZK6 protein CRABS CLAW4.1e-5371.18Show/hide
Query:  NSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE
        +SEDKSSMDLVQPSDHLCYVKCNFC+TVLA                                          QSQVGFSNDIRKGASTSSSS+SSSMANE
Subjt:  NSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE

Query:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH
        SPS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSA GSASGTH++
Subjt:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH

A0A6J1HVT7 protein CRABS CLAW1.2e-4967.63Show/hide
Query:  NSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGAST---SSSSTSSSM
        +SEDK+SMDLVQPS+HLCYVKCNFC+TVLA                                          QSQVGFSN+IRKGAST   SSSS+SSSM
Subjt:  NSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN----------------------------------------QSQVGFSNDIRKGAST---SSSSTSSSM

Query:  ANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH
        ANESPS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNS  GSASGTH++
Subjt:  ANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNH

A0A6J1IU64 protein CRABS CLAW-like isoform X13.0e-4865.14Show/hide
Query:  MSNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN-----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSM
        M +SEDKSSMDLVQP+DHLCYVKCNFC+T+LA                                           Q QVGFSND RKGAS SS+S+SSSM
Subjt:  MSNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN-----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSM

Query:  ANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNHVR
         NE PS +FVVKPPEKKHRLPSAYN FMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGS SGT N VR
Subjt:  ANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNHVR

SwissProt top hitse value%identityAlignment
O22152 Axial regulator YABBY 19.7e-2038.86Show/hide
Query:  SNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN------------------------------------QSQVG-----FSNDIRKGASTSSSSTSSSMA
        S S    S D   PSDHLCYV+CNFC T+LA N                                    Q Q+G        DI +    + S+ +  M 
Subjt:  SNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN------------------------------------QSQVG-----FSNDIRKGASTSSSSTSSSMA

Query:  NESPSLNF------------------VVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY
        N+ P++N                   V +PPEK+ R+PSAYNRF+KEEIQRIKA NP+I HREAFSAAAKNWA +
Subjt:  NESPSLNF------------------VVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY

Q76EJ0 Protein DROOPING LEAF5.0e-2445Show/hide
Query:  MDLVQPSDHLCYVKCNFCDTVLAYN----------QSQVGFSNDIR----------------------KGASTSSSSTS-----SSMANE-SPSLNFVVK
        MDLV PS+HLCYV+C +C+TVLA              + G  N++                       +G  T           S  +NE SP   FVVK
Subjt:  MDLVQPSDHLCYVKCNFCDTVLAYN----------QSQVGFSNDIR----------------------KGASTSSSSTS-----SSMANE-SPSLNFVVK

Query:  PPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHN
        PPEKKHRLPSAYNRFM+EEIQRIKAA P+IPHREAFS AAKNWA+  P  ++  ++   N
Subjt:  PPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHN

Q7XIM7 Protein YABBY 11.1e-1540.85Show/hide
Query:  SDHLCYVKCNFCDTVLAYN-----------------------------------QSQV---GF--SNDIRKGASTSSSSTSSSMANESPSLNFV--VKPP
        S+H+CYV CN+C+T+L  N                                     QV   GF  +N      ++ +  TS++M     S   V  ++PP
Subjt:  SDHLCYVKCNFCDTVLAYN-----------------------------------QSQV---GF--SNDIRKGASTSSSSTSSSMANESPSLNFV--VKPP

Query:  EKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWA
        EK+ R+PSAYNRF+KEEIQRIK +NPEI HREAFSAAAKNWA
Subjt:  EKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWA

Q8L925 Protein CRABS CLAW1.6e-3047.95Show/hide
Query:  NSEDKSSMDLVQPS---DHLCYVKCNFCDTVLAYN-------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE
        N E+K +M   + S   +HL YV+C+ C+T+LA                                       Q Q    +D +KG+S+SSSS++SS    
Subjt:  NSEDKSSMDLVQPS---DHLCYVKCNFCDTVLAYN-------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE

Query:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNHV
        SPS  FVVKPPEKK RLPSAYNRFM++EIQRIK+ANPEIPHREAFSAAAKNWA+YIPNS     SG HN +
Subjt:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNHV

Q9XFB0 Putative axial regulator YABBY 23.8e-1639.19Show/hide
Query:  SDHLCYVKCNFCDTVLA-------------------------------YNQSQVGFSNDI------------RKGASTSSSST---SSSMANESPSLNFV
        S+ +CYV C+FC T+LA                               +  S      D+            RK  ++SS ST   S ++  E+P +   
Subjt:  SDHLCYVKCNFCDTVLA-------------------------------YNQSQVGFSNDI------------RKGASTSSSST---SSSMANESPSLNFV

Query:  VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY
        ++PPEK+ R+PSAYNRF+KEEIQRIKA NPEI HREAFS AAKNWA +
Subjt:  VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY

Arabidopsis top hitse value%identityAlignment
AT1G08465.1 Plant-specific transcription factor YABBY family protein2.7e-1739.19Show/hide
Query:  SDHLCYVKCNFCDTVLA-------------------------------YNQSQVGFSNDI------------RKGASTSSSST---SSSMANESPSLNFV
        S+ +CYV C+FC T+LA                               +  S      D+            RK  ++SS ST   S ++  E+P +   
Subjt:  SDHLCYVKCNFCDTVLA-------------------------------YNQSQVGFSNDI------------RKGASTSSSST---SSSMANESPSLNFV

Query:  VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY
        ++PPEK+ R+PSAYNRF+KEEIQRIKA NPEI HREAFS AAKNWA +
Subjt:  VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY

AT1G69180.1 Plant-specific transcription factor YABBY family protein1.1e-3147.95Show/hide
Query:  NSEDKSSMDLVQPS---DHLCYVKCNFCDTVLAYN-------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE
        N E+K +M   + S   +HL YV+C+ C+T+LA                                       Q Q    +D +KG+S+SSSS++SS    
Subjt:  NSEDKSSMDLVQPS---DHLCYVKCNFCDTVLAYN-------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE

Query:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNHV
        SPS  FVVKPPEKK RLPSAYNRFM++EIQRIK+ANPEIPHREAFSAAAKNWA+YIPNS     SG HN +
Subjt:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNHV

AT2G26580.1 plant-specific transcription factor YABBY family protein1.3e-1639.44Show/hide
Query:  VQPSDHLCYVKCNFCDTVLAYNQ--SQVGFSNDIRKGASTSSSSTSSSMANESPS------LNFVV-----------------------------KPPEK
        V  ++ LCY+ CNFC+ +LA N   S +     +R G  T+  S + + A +S S       N+ V                             +PPEK
Subjt:  VQPSDHLCYVKCNFCDTVLAYNQ--SQVGFSNDIRKGASTSSSSTSSSMANESPS------LNFVV-----------------------------KPPEK

Query:  KHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY
        + R+PSAYN+F+KEEIQRIKA NP+I HREAFS AAKNWA +
Subjt:  KHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY

AT2G26580.2 plant-specific transcription factor YABBY family protein1.3e-1639.44Show/hide
Query:  VQPSDHLCYVKCNFCDTVLAYNQ--SQVGFSNDIRKGASTSSSSTSSSMANESPS------LNFVV-----------------------------KPPEK
        V  ++ LCY+ CNFC+ +LA N   S +     +R G  T+  S + + A +S S       N+ V                             +PPEK
Subjt:  VQPSDHLCYVKCNFCDTVLAYNQ--SQVGFSNDIRKGASTSSSSTSSSMANESPS------LNFVV-----------------------------KPPEK

Query:  KHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY
        + R+PSAYN+F+KEEIQRIKA NP+I HREAFS AAKNWA +
Subjt:  KHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY

AT2G45190.1 Plant-specific transcription factor YABBY family protein6.9e-2138.86Show/hide
Query:  SNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN------------------------------------QSQVG-----FSNDIRKGASTSSSSTSSSMA
        S S    S D   PSDHLCYV+CNFC T+LA N                                    Q Q+G        DI +    + S+ +  M 
Subjt:  SNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYN------------------------------------QSQVG-----FSNDIRKGASTSSSSTSSSMA

Query:  NESPSLNF------------------VVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY
        N+ P++N                   V +PPEK+ R+PSAYNRF+KEEIQRIKA NP+I HREAFSAAAKNWA +
Subjt:  NESPSLNF------------------VVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAACTCTGAAGATAAATCTTCCATGGATTTGGTTCAACCTTCTGACCACCTCTGTTATGTCAAATGCAACTTCTGCGACACTGTTCTTGCGTACAACCAGTCTCA
GGTTGGGTTCTCCAATGATATTCGAAAGGGTGCATCCACATCGTCGAGTTCCACGTCCTCTTCAATGGCAAATGAGTCCCCTTCTCTAAATTTTGTTGTTAAACCCCCTG
AGAAGAAACATAGACTGCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCA
GCAAAAAACTGGGCAAGGTACATTCCAAATTCAGCTGCTGGCTCGGCTTCTGGAACTCACAACCACGTAAGA
mRNA sequenceShow/hide mRNA sequence
TATGAGCAACTCTGAAGATAAATCTTCCATGGATTTGGTTCAACCTTCTGACCACCTCTGTTATGTCAAATGCAACTTCTGCGACACTGTTCTTGCGTACAACCAGTCTC
AGGTTGGGTTCTCCAATGATATTCGAAAGGGTGCATCCACATCGTCGAGTTCCACGTCCTCTTCAATGGCAAATGAGTCCCCTTCTCTAAATTTTGTTGTTAAACCCCCT
GAGAAGAAACATAGACTGCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGC
AGCAAAAAACTGGGCAAGGTACATTCCAAATTCAGCTGCTGGCTCGGCTTCTGGAACTCACAACCACGTAAGA
Protein sequenceShow/hide protein sequence
MSNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYNQSQVGFSNDIRKGASTSSSSTSSSMANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAA
AKNWARYIPNSAAGSASGTHNHVR