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Lsi04G003940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G003940
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGCK domain-containing protein
Genome locationchr04:3889912..3890557
RNA-Seq ExpressionLsi04G003940
SyntenyLsi04G003940
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsIPR012891 - GCK


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601449.1 hypothetical protein SDJN03_06682, partial [Cucurbita argyrosperma subsp. sororia]3.1e-6682.29Show/hide
Query:  MSTSDSKLQDAESN-AAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKED
        MSTS SK QDAESN AAA ++ +DQ Q G+P+HSEEKS EESGQSGKI E+GG DE GE L+EEEEGECGFCLFMKGGGC+DSF+EWEKCIEEAEKNKED
Subjt:  MSTSDSKLQDAESN-AAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKED

Query:  IVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASA
        IVEKCFE+TGALKKCMEAHADYYEPILKAEKMAE EAIIELEKE TPNATQQ+T+S + EV AG+ENLEEQKASA
Subjt:  IVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASA

KAG7032232.1 hypothetical protein SDJN02_06275, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-6781.46Show/hide
Query:  MSTSDSKLQDAESN-AAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKED
        MSTS SK QDAESN AAA ++ +DQ Q G+P+HSEEKS EESGQSGKI E+GG DE GE L+EEEEGECGFCLFMKGGGC+DSF+EWEKCIEEAEKNKED
Subjt:  MSTSDSKLQDAESN-AAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKED

Query:  IVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGR
        IVEKCFE+TGALKKCMEAHADYYEPILKAEKMAE EAIIELEKE TPNATQQ+T+S + EV AG+ENLEEQKASA G+
Subjt:  IVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGR

XP_022997117.1 uncharacterized protein LOC111492108 [Cucurbita maxima]6.2e-6782.39Show/hide
Query:  MSTSDSKLQDAESN--AAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKE
        MSTS+SKLQDAESN  AAA +T +DQ Q G+P+HSEEKS +ES QSGKI E+GG DE GE L+EEEEGECGFCLFMKGGGC+DSF+EWEKCIEEAEKNKE
Subjt:  MSTSDSKLQDAESN--AAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKE

Query:  DIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASA
        DIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAE EAIIELEKE TPNATQQ+T+SK+ EV +G+ENLEEQKASA
Subjt:  DIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASA

XP_023536143.1 uncharacterized protein LOC111797387 [Cucurbita pepo subsp. pepo]1.3e-6784Show/hide
Query:  MSTSDSKLQDAESN-AAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKED
        MSTS+SKLQDAESN AAAT+T +DQ Q G+P+HSEEKS EESGQSGKI  +GG DE GE L+EEEEGECGFCLFMKGGGC+DSF+EWEKCIEEAEKNKED
Subjt:  MSTSDSKLQDAESN-AAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKED

Query:  IVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASA
        IVEKCFEVTGALKKCMEAHADYYEPILKAEKMAE EAIIELEKE TPNATQQ+T+S + EV AG+ENLEEQKASA
Subjt:  IVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASA

XP_038893081.1 uncharacterized protein LOC120081968 [Benincasa hispida]1.7e-7790.4Show/hide
Query:  MSTSDSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDI
        MSTS+SKLQDAES AAAT+TL+DQPQSGS + SEEK SEES QSG+IPE+GGGDEEGE LEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDI
Subjt:  MSTSDSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDI

Query:  VEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGR
        VEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQN+NSK+ EVN GSENLEEQKASAGG+
Subjt:  VEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGR

TrEMBL top hitse value%identityAlignment
A0A0A0KU46 GCK domain-containing protein3.7e-6579.1Show/hide
Query:  MSTSDSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDI
        MSTS+SKLQDAESNAAAT+TL+DQPQS +P++SEEKSSEE+  SGKI E+GGGDE GE +EEEEEGECGFCLFMKGGGC+DSFI WEKCIEEAEKNKEDI
Subjt:  MSTSDSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDI

Query:  VEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGR
        VEKCFEVTGALKKCMEAH DYYEPILKAEKMAEEEAIIELEKE TP+A+QQ+TNS            +EQKAS GG+
Subjt:  VEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGR

A0A1S3BFM8 transcription elongation factor spt5-like1.0e-6276.8Show/hide
Query:  MSTSDSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGL----EEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKN
        MSTS+SKLQDAESNAAA++TL+DQPQS S  HS+EKSSEE+  SGKI E+GGGDE GE +    EEEEEGECGFCLFMKGGGC+DSFI WEKCIEEAEKN
Subjt:  MSTSDSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGL----EEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKN

Query:  KEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGR
        KEDIVEKCFEVTGALKKCMEAH DYYEPILKAEKMAEEEAIIELEKEI P+A+Q++TNS            +EQKASAGG+
Subjt:  KEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGR

A0A5A7SVC8 Transcription elongation factor spt5-like1.0e-6276.8Show/hide
Query:  MSTSDSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGL----EEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKN
        MSTS+SKLQDAESNAAA++TL+DQPQS S  HS+EKSSEE+  SGKI E+GGGDE GE +    EEEEEGECGFCLFMKGGGC+DSFI WEKCIEEAEKN
Subjt:  MSTSDSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGL----EEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKN

Query:  KEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGR
        KEDIVEKCFEVTGALKKCMEAH DYYEPILKAEKMAEEEAIIELEKEI P+A+Q++TNS            +EQKASAGG+
Subjt:  KEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGR

A0A6J1G1F8 uncharacterized protein LOC1114498162.0e-6380.79Show/hide
Query:  MSTSDSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDI
        MSTS+SKLQDAESNAAAT+TL+D+ QSGSP   EEKSS ES QSGKIPE+GG D      EEEEEGECGFCLFMKGGGCKDSF+EWEKCIEEAEKNKEDI
Subjt:  MSTSDSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDI

Query:  VEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGR
        VEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKE+TP+A     NS   EVN GS N EEQKASAG +
Subjt:  VEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGR

A0A6J1K434 uncharacterized protein LOC1114921083.0e-6782.39Show/hide
Query:  MSTSDSKLQDAESN--AAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKE
        MSTS+SKLQDAESN  AAA +T +DQ Q G+P+HSEEKS +ES QSGKI E+GG DE GE L+EEEEGECGFCLFMKGGGC+DSF+EWEKCIEEAEKNKE
Subjt:  MSTSDSKLQDAESN--AAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKE

Query:  DIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASA
        DIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAE EAIIELEKE TPNATQQ+T+SK+ EV +G+ENLEEQKASA
Subjt:  DIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G14048.1 GCK domain-containing protein1.6e-0741.18Show/hide
Query:  EEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDIVEKCFEVTGALKKCME-AHADYYEPILKAEKMAEEEAIIELEKEI
        EEEE+GE  F  FM+GGGCK+ F +WE C +EA             V   + KCM     D+Y P L A+K A+E     +EKE+
Subjt:  EEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDIVEKCFEVTGALKKCME-AHADYYEPILKAEKMAEEEAIIELEKEI

AT1G14060.1 GCK domain-containing protein1.1e-2948.62Show/hide
Query:  SDSKLQ-DAESNAAATETLDDQPQSGSPDHSEE--------KSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAE
        SD K Q + E+  A +E L D   S +P  SEE        +  E+S    K  E GGGD +G     EEEGECGFCLFMKGGGCKDSF+ WE+C+E AE
Subjt:  SDSKLQ-DAESNAAATETLDDQPQSGSPDHSEE--------KSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAE

Query:  KNKEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAG
        KNKEDIV  C EVT  LKKCM+ H+DYY+PIL AEK AE E   ELE E            K  E     E +  +K + G
Subjt:  KNKEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAG

AT5G02210.1 GCK domain-containing protein1.1e-1351.14Show/hide
Query:  EEEEEGECGFCLFMKGGGCKDSFIEW-EKC---IEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEI
        E  EE +  F  FMKGGGCK+SF  W + C    EEAEKNK D+V KC  + G   KCM+ H+DYY PIL  +K  EE     LEKE+
Subjt:  EEEEEGECGFCLFMKGGGCKDSFIEW-EKC---IEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIELEKEI

AT5G57570.1 GCK domain-containing protein2.1e-1243.27Show/hide
Query:  PDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKN-KEDIVEKCFEVTGALKKCMEAHADYYEPILKA
        P  ++ + S +  +S  + E+     EG+G EEEE GEC  C F+KGG CK+SFI  E+C++EAE++ +E    KC EV    K CM  +  YYEPIL  
Subjt:  PDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKN-KEDIVEKCFEVTGALKKCMEAHADYYEPILKA

Query:  EKMA
        E  A
Subjt:  EKMA

AT5G57640.1 GCK domain-containing protein2.3e-1134.46Show/hide
Query:  DSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLE------EEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKE
        D      + +  +  TL +  +      +  +   +  +S  + E+ G +EE + L+      EEE GEC  C F+KGG CK++F E E C +EA+KN E
Subjt:  DSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLE------EEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKE

Query:  DIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIEL---EKE
        D V KC E     K CM  +  YYEP+L  E  A  + + EL   EKE
Subjt:  DIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAEEEAIIEL---EKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACTTCGGATTCGAAACTCCAAGACGCAGAATCAAACGCCGCCGCCACTGAAACCCTGGACGATCAACCACAATCGGGTTCCCCCGATCACTCTGAGGAAAAATC
TTCCGAGGAATCAGGCCAATCGGGAAAGATTCCCGAAAATGGAGGTGGAGATGAAGAAGGAGAGGGGCTAGAAGAGGAAGAGGAGGGAGAATGTGGGTTTTGCTTGTTTA
TGAAAGGGGGTGGTTGCAAAGATAGCTTCATAGAGTGGGAGAAGTGCATTGAGGAGGCGGAGAAGAACAAGGAGGATATTGTAGAGAAGTGCTTTGAAGTGACTGGGGCT
CTGAAGAAATGTATGGAGGCCCATGCGGATTATTACGAGCCGATTCTGAAGGCTGAGAAAATGGCAGAGGAGGAGGCTATTATCGAATTGGAGAAGGAAATAACTCCAAA
TGCTACCCAGCAAAATACGAATTCCAAAAACCGGGAGGTAAATGCGGGTTCTGAGAATTTGGAAGAACAGAAGGCCTCTGCGGGAGGCCGTGGAAGATATCTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACTTCGGATTCGAAACTCCAAGACGCAGAATCAAACGCCGCCGCCACTGAAACCCTGGACGATCAACCACAATCGGGTTCCCCCGATCACTCTGAGGAAAAATC
TTCCGAGGAATCAGGCCAATCGGGAAAGATTCCCGAAAATGGAGGTGGAGATGAAGAAGGAGAGGGGCTAGAAGAGGAAGAGGAGGGAGAATGTGGGTTTTGCTTGTTTA
TGAAAGGGGGTGGTTGCAAAGATAGCTTCATAGAGTGGGAGAAGTGCATTGAGGAGGCGGAGAAGAACAAGGAGGATATTGTAGAGAAGTGCTTTGAAGTGACTGGGGCT
CTGAAGAAATGTATGGAGGCCCATGCGGATTATTACGAGCCGATTCTGAAGGCTGAGAAAATGGCAGAGGAGGAGGCTATTATCGAATTGGAGAAGGAAATAACTCCAAA
TGCTACCCAGCAAAATACGAATTCCAAAAACCGGGAGGTAAATGCGGGTTCTGAGAATTTGGAAGAACAGAAGGCCTCTGCGGGAGGCCGTGGAAGATATCTTCCTTAA
Protein sequenceShow/hide protein sequence
MSTSDSKLQDAESNAAATETLDDQPQSGSPDHSEEKSSEESGQSGKIPENGGGDEEGEGLEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDIVEKCFEVTGA
LKKCMEAHADYYEPILKAEKMAEEEAIIELEKEITPNATQQNTNSKNREVNAGSENLEEQKASAGGRGRYLP