CuGenDBv2

Gene ID	Lsi04G003970
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	50S ribosomal protein L32, chloroplastic
Genome location	chr04:3899248..3902013
RNA-Seq Expression	Lsi04G003970
Synteny	Lsi04G003970
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002677 - Ribosomal protein L32p IPR011332 - Zinc-binding ribosomal protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574067.1 hypothetical protein SDJN03_27954, partial [Cucurbita argyrosperma subsp. sororia]

3.8e-61

83.21

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Query:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR
        MALRI+RA+EGQ GSM G+KAM   LPHSSPISGI+DRKDS PPL LPEFN ESD+D INNCSI+GFGFPSLSFSG MELMAVPK+K SPHKRGIRNGP+
Subjt:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR

Query:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR
        ALKPIPVI+RCK CGKVKLPH+YCCSGR GEQDNSAR
Subjt:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR

XP_022945635.1 uncharacterized protein LOC111449817 [Cucurbita moschata]

3.8e-61

83.21

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Query:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR
        MALRI+RA+EGQ GSM G+KAMAN LPHSSPI+GI+ RKDS PPL LPEFN ESD+D INNCSI+GFGFPSLSFSG MELMAVPK+K SPHKRGIRNGP+
Subjt:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR

Query:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR
        ALKPIPVI+RCK CGKVKLPH+YCCSGR GEQDNSAR
Subjt:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR

XP_022968104.1 uncharacterized protein LOC111467436 [Cucurbita maxima]

1.7e-61

83.94

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Query:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR
        MALRI+RA+EGQ GSM G+KAMA  LPHSSPISGI+D KDS PPL LPEFN ESD+D INNCSI+GFGFPSLSFSG MELMAVPK+KVSPHKRGIRNGP+
Subjt:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR

Query:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR
        ALKPIPVI+RCK CGKVKLPH+YCCSGR GEQDNSAR
Subjt:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR

XP_023541204.1 uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo]

5.8e-62

83.94

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Query:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR
        MALRI+RA+EGQ GSM G+KAM   LPHSSPISGI+DRKDS PPL LPEFN ESD+DRINNCSI+GFGFPSLSFSG MELMAVPK+K SPHKRGIRNGP+
Subjt:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR

Query:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR
        ALKPIPVI+RCK CGKVKLPH+YCCSGR GEQDNSAR
Subjt:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR

XP_038891873.1 uncharacterized protein LOC120081238 [Benincasa hispida]

4.8e-64

89.05

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Query:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR
        MALRI+RALE Q GSMLG+K MAN LPHSSPISGI+DRKDSTPPL LPEFNQESDKDRINNCSIMG GFP+LSFSG MELMAVPKKKVSP+KRGIRNGP+
Subjt:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR

Query:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR
        ALKPIPVIVRCK CGKVKLPHYYCCSGR GEQDNSAR
Subjt:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQP7 50S ribosomal protein L32, chloroplastic

9.1e-61

85.29

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Query:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR
        MALRIMRALEGQMGSMLG+KAMA  LPHSSPISG++  KDS PPL LPEFNQE D D+ NNCSI+GFGFPSLSFSG MELMAVPKKKVSPHKR IRN P+
Subjt:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR

Query:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSA
        ALKPIPVIVRCK CGKVKLPHYYCCSGRPG+QDNSA
Subjt:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSA

A0A5A7SYB6 50S ribosomal protein L32, chloroplastic

7.2e-58

83.82

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Query:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR
        MALRIMRALEGQ GSMLG+KAMA  LPHSS   G++  KDS PPL LPEFNQESD+DRINNCSI+GFGFPSL FSG MELMAVPKKKVSPHKR IRN P+
Subjt:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR

Query:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSA
        ALKPIPVI+RCK CGKVKLPHYYCCSGRPGEQDNSA
Subjt:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSA

A0A6J1DBR3 50S ribosomal protein L32, chloroplastic

1.3e-59

82.14

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Query:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR
        MALRIMRA+EGQ  SMLG+KAMAN LPH SP+SGI+DRKDSTPPL LPEFN ESD DRI NCS +GFGFPSLSFSG MELMAVPK+KVSPHKRGIRNGP+
Subjt:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR

Query:  ALKPIPVIVRCKCCGKVKLPHYYCCS---GRPGEQDNSAR
        ALKPIPVI+RCK CGKVKLPH+YCCS   GR GEQDNS R
Subjt:  ALKPIPVIVRCKCCGKVKLPHYYCCS---GRPGEQDNSAR

A0A6J1G1I2 50S ribosomal protein L32, chloroplastic

1.8e-61

83.21

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Query:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR
        MALRI+RA+EGQ GSM G+KAMAN LPHSSPI+GI+ RKDS PPL LPEFN ESD+D INNCSI+GFGFPSLSFSG MELMAVPK+K SPHKRGIRNGP+
Subjt:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR

Query:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR
        ALKPIPVI+RCK CGKVKLPH+YCCSGR GEQDNSAR
Subjt:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR

A0A6J1HYN6 50S ribosomal protein L32, chloroplastic

8.2e-62

83.94

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Query:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR
        MALRI+RA+EGQ GSM G+KAMA  LPHSSPISGI+D KDS PPL LPEFN ESD+D INNCSI+GFGFPSLSFSG MELMAVPK+KVSPHKRGIRNGP+
Subjt:  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPR

Query:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR
        ALKPIPVI+RCK CGKVKLPH+YCCSGR GEQDNSAR
Subjt:  ALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR

SwissProt top hits

e value

%identity

Alignment

Q0BTE2 50S ribosomal protein L32

5.8e-04

45.28

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Query:  MAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQD
        MAVPKKK SP +RG+R   +AL        C  CG++K PH+ C  G  G  D
Subjt:  MAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQD

Q2N923 50S ribosomal protein L32

2.6e-04

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Query:  MAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKLPHYYC
        MAVPK+KVSPH+RG R    +LK +     C  CG++K PH  C
Subjt:  MAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKLPHYYC

Arabidopsis top hits

e value

%identity

Alignment

AT1G26740.1 Ribosomal L32p protein family

1.0e-32

51.94

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Query:  MALRIMRALEGQMGS--MLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNG
        MALR+       + S  +L  +++++     SP++G  DR  S PPL LPEF+Q  ++  +      GFG PS +F+G MELMAVPKKK+S HKRGIRNG
Subjt:  MALRIMRALEGQMGS--MLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNG

Query:  PRALKPIPVIVRCKCCGKVKLPHYYCCSG
        P+ALKP+PVI+RC+ CG+VKLPH++CCSG
Subjt:  PRALKPIPVIVRCKCCGKVKLPHYYCCSG

AT1G69485.1 Ribosomal L32p protein family

3.7e-22

73.77

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Query:  MELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKLPHYYCCSGR---PGEQDNS
        MELMAVPKKK+S HKRGIRNGP+A KP PVI+RC+ CG+VKLPH+YCCSG    P EQ NS
Subjt:  MELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKLPHYYCCSGR---PGEQDNS

Sequences

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CDS sequence

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mRNA sequence

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ATGTTCTTGCGGTGCCGGGCTTTGAGCTCTTGGGCCGAACAAAGGGATCCAAAGCCCGTCACCAACCCATTGGCCCAGCTCAATGTCCAAACGACGCCGTCGAATACGTG
CTGGGCTATGGCGTTGAGGATTATGAGGGCGCTCGAGGGTCAGATGGGTTCAATGCTAGGGATTAAAGCGATGGCTAATACTTTACCCCATTCTTCGCCGATTTCTGGGA
TCGTGGACCGTAAGGACTCCACGCCCCCGCTTTTTCTTCCGGAGTTTAACCAGGAATCTGATAAAGATAGAATCAACAACTGCAGTATTATGGGATTTGGTTTCCCTAGC
TTATCTTTTTCCGGGTGCATGGAGCTCATGGCTGTTCCTAAGAAGAAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGTCCAAGGGCTCTAAAACCTATTCCAGTTAT
AGTTCGGTGCAAGTGTTGTGGTAAAGTGAAGCTGCCTCACTACTATTGTTGCAGTGGAAGGCCAGGGGAGCAGGATAACTCAGCCAGATGAGGCTATGCAGAGTAAAAAG
GACAGACTGAAAGAAAGGTGTTCAGTCCCATATAATCCTCCCAATACGTGGGAGCTACAGTTTCCTTTTGAGTATTCTTCTTTATTAGGTTCTTTTAAGTTTTGGTTCTC
CTGCTCACTGTATGACAGATGCAAGATTTCAACATGTTATAACCATTAACTAGCTGTTGAGCCATATTCTTGCTTTGTGCTATTCAGCAGACTTCCTTCAGTTCTTCCAG
AAATTGCTTGATGAGGTGCCAGACATGATGACTAGCCTTAACCGGTGTGGGCGGGGCTGGATGGAAAAGAGAGGTAAAAGAACTTAAGAATCAACCACGGTGGATAATGT
AACTCAAACTAAAATCTATATAAGTATATTTATTTTCCATTGTTTTGTACTCTCCCACATTTGGAGAGAGATCAAATAAAGGAAGTCACAATGGTTGCAATGCGTCAAGA
CACTTCTCGACGGTCTTGGCCAGGGTTTTCAAAGATTACAAGAGAAGATGATATAAGATTAAATTTGTCTTT

Protein sequence

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MFLRCRALSSWAEQRDPKPVTNPLAQLNVQTTPSNTCWAMALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPS
LSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR

Lsi04G003970 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome