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Lsi04G003990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G003990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA-binding protein
Genome locationchr04:3910793..3914353
RNA-Seq ExpressionLsi04G003990
SyntenyLsi04G003990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601448.1 Galactoside 2-alpha-L-fucosyltransferase, partial [Cucurbita argyrosperma subsp. sororia]3.7e-9192.02Show/hide
Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLT+TRKLVKGLAKAEPIWLKAMEQAPPPTFPR+DGT+KTI+LPEDVYVKKFFQK+PDSKY DAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
        EAM VA+MEYRAEKKAKK AYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEI QRLKEERAAEMQ+R    GW
Subjt:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
KAG7032230.1 hypothetical protein SDJN02_06273 [Cucurbita argyrosperma subsp. argyrosperma]1.1e-9091.49Show/hide
Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLT+TRKLVKGLAKAEPIWLKAMEQAPPPTFPR+DGT+KTI+LPEDVYV+KFFQK+PDSKY DAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
        EAM VA+MEYRAEKKAKK AYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEI QRLKEERAAEMQ+R    GW
Subjt:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
XP_022151151.1 uncharacterized protein LOC111019147 [Momordica charantia]2.4e-9090.96Show/hide
Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLL +TRKLVKGLAKAEP+WLKAMEQAPPPTFPRVDGT+KTISLPEDVYVKKFFQK+PDSKY DAIKFCSFDPPPARIFGLRVLELKEQGV EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
        EAM VA+MEYRAEKK KK AY+RLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEI QRLKEERAAEMQ+R   GGW
Subjt:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
XP_022957544.1 uncharacterized protein LOC111458914 [Cucurbita moschata]3.7e-9192.02Show/hide
Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLT+TRKLVKGLAKAEPIWLKAMEQAPPPTFPR+DGT+KTI+LPEDVYVKKFFQK+PDSKY DAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
        EAM VA+MEYRAEKKAKK AYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEI QRLKEERAAEMQ+R    GW
Subjt:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
XP_022996766.1 uncharacterized protein LOC111491881 [Cucurbita maxima]3.2e-9091.49Show/hide
Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLL++TRKLVKGLAKAEPIWLKAMEQAPPPTFPR+DG VKTI+LPEDVYVKKFFQK+PDSKY DAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
        EAM VA+MEYRAEKKAKK AYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEI QRLKEERAAEMQ+R    GW
Subjt:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
TrEMBL top hitse value%identityAlignment
A0A0A0KQQ3 Uncharacterized protein1.1e-8588.71Show/hide
Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLTKTRKLVKGLAKAEP+WLKAMEQAPPP+FPRVDGT+KTI+LPEDVYVKKFF+K+PDS YHDAIKFC F+PPPARIF  RVLELKEQGV+EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQG
        EAM VA+MEYRAEKK KK AYSRLKQIARLQGKKPP NPYPSAIKEIQAEERKFVRDRFF+PKIKEI QRLKEERAAEMQER G G
Subjt:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQG
A0A1S3BEG4 uncharacterized protein LOC1034891461.1e-8386.17Show/hide
Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLTKTRKLVKGLAKAEP+WLKAMEQAPPPTFPRVDG V+ I+LPEDVYVKKFFQK+PDS YHDAIKF  F+P PARIF  RVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
        EAM  A+MEYRAEKK KK AYSRLKQIARLQGKKPPPNP+PSAIK+IQAEERK+VRDRFFNPKIKEI QRLKEE+AAEMQER+ +GGW
Subjt:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
A0A6J1DDQ7 uncharacterized protein LOC1110191471.2e-9090.96Show/hide
Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLL +TRKLVKGLAKAEP+WLKAMEQAPPPTFPRVDGT+KTISLPEDVYVKKFFQK+PDSKY DAIKFCSFDPPPARIFGLRVLELKEQGV EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
        EAM VA+MEYRAEKK KK AY+RLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEI QRLKEERAAEMQ+R   GGW
Subjt:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
A0A6J1GZF0 uncharacterized protein LOC1114589141.8e-9192.02Show/hide
Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLT+TRKLVKGLAKAEPIWLKAMEQAPPPTFPR+DGT+KTI+LPEDVYVKKFFQK+PDSKY DAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
        EAM VA+MEYRAEKKAKK AYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEI QRLKEERAAEMQ+R    GW
Subjt:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
A0A6J1KC52 uncharacterized protein LOC1114918811.5e-9091.49Show/hide
Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLL++TRKLVKGLAKAEPIWLKAMEQAPPPTFPR+DG VKTI+LPEDVYVKKFFQK+PDSKY DAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
        EAM VA+MEYRAEKKAKK AYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEI QRLKEERAAEMQ+R    GW
Subjt:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G26750.1 unknown protein9.0e-5153.26Show/hide
Query:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MS+MKGDLL+KTR+LV GLA  EP+WLKAME +PPP FPR +G ++ I LPED YV+KF  K+P +K  D  K  +F P  AR++G RVLELKE G+SE 
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRG
        +AM VA+MEY +E+K  K AY RLK++A +Q K PPP PYPSA K +  + +   +DRF  P ++ +V +LK E+   +Q+R G
Subjt:  EAMGVAHMEYRAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTTCATGAAAGGAGACTTGCTAACTAAGACTAGAAAGCTCGTCAAGGGCTTGGCCAAAGCAGAACCTATTTGGCTCAAAGCCATGGAGCAGGCGCCACCTCCTAC
ATTTCCTCGAGTAGATGGAACAGTCAAGACAATCAGTCTTCCTGAGGATGTATATGTAAAAAAGTTCTTCCAGAAATATCCAGATTCAAAATACCACGATGCCATCAAGT
TTTGTAGTTTTGATCCTCCTCCAGCCCGAATATTTGGCTTGCGGGTGCTTGAACTGAAGGAACAGGGTGTCAGTGAGGAAGAAGCCATGGGAGTAGCCCATATGGAATAC
CGGGCAGAGAAAAAGGCAAAAAAGATGGCTTACTCTCGCTTGAAGCAAATTGCACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCGTATCCAAGTGCTATTAAGGAGAT
ACAAGCCGAGGAAAGGAAATTCGTCCGGGATCGTTTCTTCAACCCCAAGATTAAAGAGATCGTACAAAGGTTGAAGGAGGAGAGAGCAGCTGAAATGCAGGAAAGAAGAG
GGCAAGGCGGCTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATAAATCATTACCAAATATTGAGAGAAAAATGAATACCTATTATTCAAGAATTTGCAAGACATGATAAAAAAATTCTATTAATATTGCAAAATGTAATTAAAAAAGTGTA
AGATAACCTAGAATGGAAAAAAAAACTGATAATCTAAAATGAAAATGTAAAACCTTATTTTGAAATACAAAGAAGAGGTTTATGTAAAATTTAGGTGCAAAGCAATAGTT
TTTTTAACTTCAAAGGACAAAAGAGAGATTTCACACCGTCAAAAATACTTAAAACCGTTTAATACGAACCGCTGGCTGATCGGTTTTCAACTGGTCCGGGCGGCTCGATT
TCCGGCGGTTTCCTTCCAATAATCCTTCTTGTTCTTGCCCAATTCTTGAACTAGGAGATTAGCTGCTAAACTCTCTAGTTTCATTTCATCATCTTTGACCTCTCGTCTGT
TGTTACTGTATTTAGTAGATCGTTGGATCGAATCACAATTCAAAAAGGAGGGAGCTATGTCCTTCATGAAAGGAGACTTGCTAACTAAGACTAGAAAGCTCGTCAAGGGC
TTGGCCAAAGCAGAACCTATTTGGCTCAAAGCCATGGAGCAGGCGCCACCTCCTACATTTCCTCGAGTAGATGGAACAGTCAAGACAATCAGTCTTCCTGAGGATGTATA
TGTAAAAAAGTTCTTCCAGAAATATCCAGATTCAAAATACCACGATGCCATCAAGTTTTGTAGTTTTGATCCTCCTCCAGCCCGAATATTTGGCTTGCGGGTGCTTGAAC
TGAAGGAACAGGGTGTCAGTGAGGAAGAAGCCATGGGAGTAGCCCATATGGAATACCGGGCAGAGAAAAAGGCAAAAAAGATGGCTTACTCTCGCTTGAAGCAAATTGCA
CGTCTTCAAGGGAAGAAACCTCCTCCTAACCCGTATCCAAGTGCTATTAAGGAGATACAAGCCGAGGAAAGGAAATTCGTCCGGGATCGTTTCTTCAACCCCAAGATTAA
AGAGATCGTACAAAGGTTGAAGGAGGAGAGAGCAGCTGAAATGCAGGAAAGAAGAGGGCAAGGCGGCTGGTGATAAAATCTTCCATCCTCCCATCTTTGCTCCTGGAAAC
TAGCTTTTGCAATAATTTTGGCAGTTCATTAATCGGGAATAACACACAATTTTTAGATTCAAGCGAACACCATATCTGAAGCATTGGATCAAGTATGTTAAAAGATTTTT
CTTTTGATGTTATTCAATTATTAGATGGCTGACGCTCTCAGAAGGTGGCGATGAGCATCTAGATAAATGTTCGATCAACTTTTAATCATATTGAACCAATTCAGTATAGG
TATCATTTTTTTTAATACAGTTTTAAATATCACATTTTTGGGCAAATTGAAGTATGTTGTTACAATTTCACCCATTCAACTTTGAATTGAAAAATTCAAACCCCCCAACT
TTCATAATAGTAAAAATTAGCCCCTTCCCGTTAAGATGGTAAACTACAGTTACTTTGGTGGCCATTGAAAAAAGAGAAGATAAAAAGAACCTAGATCTTCTTCCCAAAAT
CATTCATCTGCAGTGGAACTTCTTCAAGCAAAATAGCAGACTCCTTTGCCTGCAGCCAAACGAGCAAGCTCATGGGCAAAATGATTGCATTCACAGCAGTTGGAGAAGTT
AAGAGGAAAGAAAATGGAAAGTTTGCGAGAGCCCATGCTCGTAGGTGAGAATCTGCTATCGACGTCGATACCCCTCCGTGCAACCCTTGTTAAGTGTTAGTGCAAACTTA
TTTTGCAAGTGATAGAATTAGTTGTTTCTTTTAAATTAATGTTATTTGCTTTTATTTAAATTAGTGACTTTTAAGTGGCCACTTAGTGGGATTGATTAAGGTGGAATTTA
AAGGTGGGTGGTAGAGTTTTAAGGTTAGTATATTAATGGGTAGTTTATTATTTGTCTATAAATATTTGTAATGTTTCCAATTCAATAAACAATATAGAACTCAATTGAAG
CACTTGATCTTCCCTGCATTATTTTTCTCTTGTTTTCACTTTCGTTCTCTTCGTTTTTGTTTTTAG
Protein sequenceShow/hide protein sequence
MSFMKGDLLTKTRKLVKGLAKAEPIWLKAMEQAPPPTFPRVDGTVKTISLPEDVYVKKFFQKYPDSKYHDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMGVAHMEY
RAEKKAKKMAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIVQRLKEERAAEMQERRGQGGW