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Lsi04G004140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G004140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L18
Genome locationchr04:4020375..4024729
RNA-Seq ExpressionLsi04G004140
SyntenyLsi04G004140
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151144.1 uncharacterized protein LOC111019142 [Momordica charantia]9.1e-2680Show/hide
Query:  LLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK
        LLNTL+F+KVYGGMP  N+PG LSK+STPFGFQS+PF+FPSLK+KNCD+KPL+IQARG+SK ESAKIRNRR+QKK
Subjt:  LLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK

XP_022987454.1 uncharacterized protein LOC111484997 [Cucurbita maxima]4.1e-2681.01Show/hide
Query:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK
        M SL LNT+NF+KV GGM F NVPG LSKTSTPF FQS+PF+FPSLK ++CDVKPLMIQARGNSKTESAK+RNRRLQKK
Subjt:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK

XP_023547360.1 uncharacterized protein LOC111806273 [Cucurbita pepo subsp. pepo]1.2e-2579.75Show/hide
Query:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK
        M SL LNT+NF+KV GGM F NVPG LSKTSTPF FQS+PF+FPSLK ++CDVKPLMIQARGNSKTESAK+RNRR QKK
Subjt:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK

XP_038891854.1 50S ribosomal protein L18 isoform X1 [Benincasa hispida]1.7e-2784.81Show/hide
Query:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK
        M SLLLNTLN KKVYGGM F N PG LSKTSTPFG QS+PF+FPSLKT+NCDVKPL IQARGNSKTESAKI NRRLQKK
Subjt:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK

XP_038891856.1 50S ribosomal protein L18 isoform X2 [Benincasa hispida]1.7e-2784.81Show/hide
Query:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK
        M SLLLNTLN KKVYGGM F N PG LSKTSTPFG QS+PF+FPSLKT+NCDVKPL IQARGNSKTESAKI NRRLQKK
Subjt:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK

TrEMBL top hitse value%identityAlignment
A0A1S3BEE0 50S ribosomal protein L184.9e-2579.75Show/hide
Query:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK
        MSSLLLNT NFKKV+GG+ F NV G L KTS PFG QS+ F F SLKTK+CDVKPLMIQARGNSKTESAK+RNRRLQKK
Subjt:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK

A0A5D3D244 50S ribosomal protein L184.9e-2579.75Show/hide
Query:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK
        MSSLLLNT NFKKV+GG+ F NV G L KTS PFG QS+ F F SLKTK+CDVKPLMIQARGNSKTESAK+RNRRLQKK
Subjt:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK

A0A6J1DC55 uncharacterized protein LOC1110191424.4e-2680Show/hide
Query:  LLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK
        LLNTL+F+KVYGGMP  N+PG LSK+STPFGFQS+PF+FPSLK+KNCD+KPL+IQARG+SK ESAKIRNRR+QKK
Subjt:  LLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK

A0A6J1GYP6 uncharacterized protein LOC1114586892.2e-2578.48Show/hide
Query:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK
        M SL LNT+NF+KV GGM F NVPG LSKT TPF FQS+PF+FPSLK ++CDVKPLMIQARGNSKTESAK+RNRR QKK
Subjt:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK

A0A6J1JIY0 uncharacterized protein LOC1114849972.0e-2681.01Show/hide
Query:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK
        M SL LNT+NF+KV GGM F NVPG LSKTSTPF FQS+PF+FPSLK ++CDVKPLMIQARGNSKTESAK+RNRRLQKK
Subjt:  MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTCTTTACTTTTAAATACTTTAAATTTCAAAAAAGTATATGGTGGCATGCCTTTTCCAAATGTTCCTGGTCCGCTATCGAAGACTTCTACGCCCTTCGGGTTCCA
GTCAAGGCCATTTAGCTTTCCCAGCTTGAAAACTAAAAATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGGAACTCTAAAACAGAAAGTGCAAAAATTAGAAATA
GGAGGTTGCAGAAAAAGGTGCGTTATCATTCGCTTTACTTCTTCTCAGTTTTTCTTGAAGGGGCTGATTTTTTCGTGGGAGGAGAGGGCAGCAATTATGATCCATCTTGG
CCAGGATTTTCCAGCTTTCCATGGTGCACACCAGAAGAATCAGCCACTGATGAAGTTGTTGAATGGCAGAATGGATTTGCAGTACAATGA
mRNA sequenceShow/hide mRNA sequence
GCTGGGGCAAAATCGCAATCCCATCCACATACACGTGGAGGATGAAACGTATTTTCTCCTGCAATCACGAGGAGCCCAGGTCGCCGGCCGGGAGAATTTCAACGGCACTG
CCTGATCGGCCTTTTACAATACAGAATCAAATAGCCTTCACACTACCAAACCACATTCATTCCGGCGGAAAATTTGCTGGGCCGGTAGCTTCATAGCGGTTGCCGATATC
TTTTTCATCTCTCTTAGTTATTATCTTCCCTCCCATGGATCGCGTGCAAGGTGCTCGACAAAATTCCTGAATGACGAAGTCCCCGTCGTACAGCGTATATTGGGCATAGA
AATCATTTCAAGAATGTCCTCTTTACTTTTAAATACTTTAAATTTCAAAAAAGTATATGGTGGCATGCCTTTTCCAAATGTTCCTGGTCCGCTATCGAAGACTTCTACGC
CCTTCGGGTTCCAGTCAAGGCCATTTAGCTTTCCCAGCTTGAAAACTAAAAATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGGAACTCTAAAACAGAAAGTGCA
AAAATTAGAAATAGGAGGTTGCAGAAAAAGGTGCGTTATCATTCGCTTTACTTCTTCTCAGTTTTTCTTGAAGGGGCTGATTTTTTCGTGGGAGGAGAGGGCAGCAATTA
TGATCCATCTTGGCCAGGATTTTCCAGCTTTCCATGGTGCACACCAGAAGAATCAGCCACTGATGAAGTTGTTGAATGGCAGAATGGATTTGCAGTACAATGACTATCCA
ATATTTGGGGCTAATCCTCGCCACACTCCAAAGCCAACGGGGAAAGTTT
Protein sequenceShow/hide protein sequence
MSSLLLNTLNFKKVYGGMPFPNVPGPLSKTSTPFGFQSRPFSFPSLKTKNCDVKPLMIQARGNSKTESAKIRNRRLQKKVRYHSLYFFSVFLEGADFFVGGEGSNYDPSW
PGFSSFPWCTPEESATDEVVEWQNGFAVQ