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Lsi04G004190 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G004190
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L18
Genome locationchr04:4041172..4041851
RNA-Seq ExpressionLsi04G004190
SyntenyLsi04G004190
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034424.1 50S ribosomal protein L18 [Cucumis melo var. makuwa]3.3e-4792.31Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG
        K+YNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR + SCTTIEAAQHVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIAI RYG
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG

Query:  FLPR
        FL R
Subjt:  FLPR

XP_022151144.1 uncharacterized protein LOC111019142 [Momordica charantia]8.6e-4892.31Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG
        K+YNGTP RPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR +PSCTTIEAAQ+VGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAI  YG
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG

Query:  FLPR
        FL R
Subjt:  FLPR

XP_022987454.1 uncharacterized protein LOC111484997 [Cucurbita maxima]8.6e-4892.31Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG
        K+YNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR SPSCTTIEAAQHVGEELVK CEDLNIHEISSYDRNGFARGEKMQAFEIAI RYG
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG

Query:  FLPR
        FL R
Subjt:  FLPR

XP_038891854.1 50S ribosomal protein L18 isoform X1 [Benincasa hispida]7.8e-4994.23Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG
        K+YNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR SPSCTTIEAAQHVGEELVK CEDLNIHEISSYDRNGFARGEKMQAFEIAI RYG
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG

Query:  FLPR
         L R
Subjt:  FLPR

XP_038891856.1 50S ribosomal protein L18 isoform X2 [Benincasa hispida]7.8e-4994.23Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG
        K+YNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR SPSCTTIEAAQHVGEELVK CEDLNIHEISSYDRNGFARGEKMQAFEIAI RYG
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG

Query:  FLPR
         L R
Subjt:  FLPR

TrEMBL top hitse value%identityAlignment
A0A1S3BEE0 50S ribosomal protein L181.6e-4792.31Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG
        K+YNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR + SCTTIEAAQHVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIAI RYG
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG

Query:  FLPR
        FL R
Subjt:  FLPR

A0A5A7ST92 50S ribosomal protein L181.6e-4792.31Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG
        K+YNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR + SCTTIEAAQHVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIAI RYG
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG

Query:  FLPR
        FL R
Subjt:  FLPR

A0A5D3D244 50S ribosomal protein L181.6e-4792.31Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG
        K+YNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR + SCTTIEAAQHVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIAI RYG
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG

Query:  FLPR
        FL R
Subjt:  FLPR

A0A6J1DC55 uncharacterized protein LOC1110191424.2e-4892.31Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG
        K+YNGTP RPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR +PSCTTIEAAQ+VGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAI  YG
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG

Query:  FLPR
        FL R
Subjt:  FLPR

A0A6J1JIY0 uncharacterized protein LOC1114849974.2e-4892.31Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG
        K+YNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR SPSCTTIEAAQHVGEELVK CEDLNIHEISSYDRNGFARGEKMQAFEIAI RYG
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG

Query:  FLPR
        FL R
Subjt:  FLPR

SwissProt top hitse value%identityAlignment
A9FGF8 50S ribosomal protein L183.9e-1137.62Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS-PSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRY
        K+  GTP RPRLSVF S K +YA ++DD + K L + STL K ++ S      +EAA+ VG  + + C++  I ++  +DRNG+    ++ A   A    
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS-PSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRY

Query:  G
        G
Subjt:  G

P04453 50S ribosomal protein L186.3e-0939.77Show/hide
Query:  GTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAF
        GT  RPRL+VF S+   YA ++DD     L   STL+  ++S    + I+AA+ V EEL K     NI+++  +DRNG+    K++AF
Subjt:  GTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAF

P82195 50S ribosomal protein L18, chloroplastic1.5e-1034.29Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS---PSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAIL
        K+  GTP RPRL VF S+K LY  ++DD     L   ST+QK++  +    +  T+E AQ +GE + K+C +  I ++ ++DR G+    +++A   A  
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS---PSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAIL

Query:  RYGFL
         +G +
Subjt:  RYGFL

Q8SAY0 50S ribosomal protein L18, chloroplastic5.7e-1036.89Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS---PSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAIL
        K+ +GT  RPRLSVF S+K LYA ++DD     L   ST+ KS+       +  T+E AQ +GE + K+C +  I ++  +DR GF    +++A   A  
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS---PSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAIL

Query:  RYG
          G
Subjt:  RYG

Q9SX68 50S ribosomal protein L18, chloroplastic7.4e-1036.89Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS---PSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAIL
        K+ NGT  RPRL VF S+K LY  ++DD     L   ST QK +       S  TIE A+ VGE + K+C +  I ++ ++DR G+    +++A   A  
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS---PSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAIL

Query:  RYG
         +G
Subjt:  RYG

Arabidopsis top hitse value%identityAlignment
AT1G14205.1 Ribosomal L18p/L5e family protein7.1e-4074.76Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG
        K++ GT T+PRLSVFCSDKQLYAMLVDD NKKCLFY STLQKS+R  P CT IEAA+ VGEEL+K   DL I+EISSYDRNG  RGE+MQAFEIAI ++G
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG

Query:  FLP
        FLP
Subjt:  FLP

AT1G48350.1 Ribosomal L18p/L5e family protein5.3e-1136.89Show/hide
Query:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS---PSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAIL
        K+ NGT  RPRL VF S+K LY  ++DD     L   ST QK +       S  TIE A+ VGE + K+C +  I ++ ++DR G+    +++A   A  
Subjt:  KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS---PSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAIL

Query:  RYG
         +G
Subjt:  RYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAACAACGGCAAGCAGTATAATGGCACTCCTACAAGACCAAGGCTTTCAGTATTCTGTTCTGATAAGCAGTTGTATGCAATGTTGGTTGACGATCAGAACAAGAA
GTGCTTGTTTTATGGAAGCACCTTACAAAAATCTATGCGTTCAAGTCCCTCATGCACCACCATCGAAGCTGCTCAACATGTTGGTGAAGAACTTGTGAAGACATGCGAGG
ACTTGAACATACACGAAATATCATCTTACGATCGAAATGGGTTTGCTCGTGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTTGCGCTATGGATTCTTACCACGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAACAACGGCAAGCAGTATAATGGCACTCCTACAAGACCAAGGCTTTCAGTATTCTGTTCTGATAAGCAGTTGTATGCAATGTTGGTTGACGATCAGAACAAGAA
GTGCTTGTTTTATGGAAGCACCTTACAAAAATCTATGCGTTCAAGTCCCTCATGCACCACCATCGAAGCTGCTCAACATGTTGGTGAAGAACTTGTGAAGACATGCGAGG
ACTTGAACATACACGAAATATCATCTTACGATCGAAATGGGTTTGCTCGTGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTTGCGCTATGGATTCTTACCACGATAA
ATATACCAAGAATTAAGGCAAGTTGTAAATGTAAATGCCTTAATTTTTATCATTCATTTAAATTTCTTCGTTGAACTATGGAGAAAAGGGTTATCAGGACAATGGAAATC
CAAGATAATCAATAGAAATCTGTGGTTGATCAAACTTAATACCAATCATTTTAAGCACAAACATCACTGAAAATGAATTGTGATTAAGCTCGATTTGGTAAAATTCAATT
GGTTACCTATTGTTACTGT
Protein sequenceShow/hide protein sequence
MDNNGKQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFLPR