CuGenDBv2

Gene ID	Lsi04G004400
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor PRE6-like
Genome location	chr04:4217941..4219711
RNA-Seq Expression	Lsi04G004400
Synteny	Lsi04G004400
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0040008 - regulation of growth (biological process) GO:0005634 - nucleus (cellular component) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR044293 - Transcription factor PRE

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135185.1 transcription factor PRE6 [Cucumis sativus]

3.5e-26

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSR+   + + +      SLQREVDDLSDRLSELLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

XP_008446331.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]

7.7e-26

78.95

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSR+   + + +      SLQREVDDLSDRLS+LLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

XP_022151230.1 transcription factor PRE6-like [Momordica charantia]

1.0e-25

78.95

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSR+   + + +      SLQREVDDLS+RLSELLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

XP_022968308.1 transcription factor PRE6-like [Cucurbita maxima]

5.6e-24

75.79

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSR+   + + +      SLQREV DLSDRLSELL +TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

XP_038893351.1 transcription factor PRE6-like [Benincasa hispida]

1.1e-27

82.11

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS RSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSR+   + + +      SLQREVDDLSDRLSELLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQJ7 Transcription regulator

1.7e-26

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSR+   + + +      SLQREVDDLSDRLSELLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

A0A1S3BFH5 transcription factor PRE6-like

3.8e-26

78.95

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSR+   + + +      SLQREVDDLSDRLS+LLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

A0A6J1DAM4 transcription factor PRE6-like

4.9e-26

78.95

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSR+   + + +      SLQREVDDLS+RLSELLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

A0A6J1G268 transcription factor PRE6-like

3.5e-24

75.79

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSR+   + + +      SLQREV DLSDRLSELL +TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

A0A6J1HXN1 transcription factor PRE6-like

2.7e-24

75.79

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSR+   + + +      SLQREV DLSDRLSELL +TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

SwissProt top hits

e value

%identity

Alignment

A2Z730 Transcription factor ILI7

1.6e-13

53.85

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Query:  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        SSRSR     +  I+D+QI DL+SKLQ L+PE R  RS+ R+P  R + +      SL REVDDLS+RL+ELLA  D  +AQAA+IR LLM
Subjt:  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

B8APB5 Transcription factor ILI6

6.8e-17

61.05

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+R SRSR+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ R+P  R + +      SL +EVDDLS+RLSELLAT+D  SAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

Q0DUR2 Transcription factor ILI6

6.8e-17

61.05

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+R SRSR+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ R+P  R + +      SL +EVDDLS+RLSELLAT+D  SAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

Q8GW32 Transcription factor PRE6

4.0e-17

63.83

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Query:  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRS-----SSRLPRGRRVVKNDSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL
        S RSSRSR+SG  S  ISDDQI+DL+SKLQ LIPE+R  RS     S  L      ++N  L REVDDLSDRLSELLA+TD  SA+AAIIRSLL
Subjt:  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRS-----SSRLPRGRRVVKNDSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL

Q9CA64 Transcription factor PRE3

2.4e-14

57.29

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGR------RVVKNDSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL
        MS R SRSR+S   SR IS+DQI DLI KLQQL+PE+R+ R S ++   R        ++N  L REVDDLS+RLSELLA +D  +AQAA+IRSLL
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGR------RVVKNDSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL

Arabidopsis top hits

e value

%identity

Alignment

AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

2.8e-18

63.83

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Query:  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRS-----SSRLPRGRRVVKNDSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL
        S RSSRSR+SG  S  ISDDQI+DL+SKLQ LIPE+R  RS     S  L      ++N  L REVDDLSDRLSELLA+TD  SA+AAIIRSLL
Subjt:  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRS-----SSRLPRGRRVVKNDSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1

1.7e-15

57.29

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGR------RVVKNDSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL
        MS R SRSR+S   SR IS+DQI DLI KLQQL+PE+R+ R S ++   R        ++N  L REVDDLS+RLSELLA +D  +AQAA+IRSLL
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGR------RVVKNDSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein

8.0e-13

49.44

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Query:  RSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        RSR++   SR ISDDQ+ DL+SKL+Q +PEI   R S ++   + + +       L REVD+LSDRLS+LL + D +S +AA+IRSLLM
Subjt:  RSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

AT3G47710.1 BANQUO 3

2.1e-13

50.53

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Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKNDS----LQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+R SRSR++G  +  I+D+QI DL+ +L +L+PE+ N R S ++   R + +  S    L +EVDDLS+RLS+LL +TD  SAQAA+IRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKNDS----LQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

AT5G15160.1 BANQUO 2

2.5e-14

51.11

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Query:  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL
        SSR  R    S  ISDDQI DLISKL+Q IPEIR  R S+ +   + + +      +L +E DDLSDRL++LL + DP S QAA+IRSL+
Subjt:  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL

Sequences

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CDS sequence

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ATGTCCGCCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGAACATTTCTGACGACCAAATTGCTGATTTGATCTCAAAATTACAGCAGCTCATCCCTGAGAT
TCGCAATGGACGTTCCTCCTCCAGGCTCCCAAGAGGAAGGAGAGTGGTTAAGAACGATAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGACTATCAGAGCTATTGG
CAACAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGTTTACTTATG

mRNA sequence

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AAAAAAAAAGTGGGGGAAATCTGACAAAGTTTTCTCGTTAATTTTGAAACAAACAAAAACAATGTCCGCCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGA
ACATTTCTGACGACCAAATTGCTGATTTGATCTCAAAATTACAGCAGCTCATCCCTGAGATTCGCAATGGACGTTCCTCCTCCAGGCTCCCAAGAGGAAGGAGAGTGGTT
AAGAACGATAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGACTATCAGAGCTATTGGCAACAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGTTTACT
TATG

Protein sequence

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MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKNDSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

Lsi04G004400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome