; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G004410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G004410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionbinding partner of ACD11 1
Genome locationchr04:4227822..4230900
RNA-Seq ExpressionLsi04G004410
SyntenyLsi04G004410
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034360 - Vip1-like, RNA recognition motif, plant
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135186.1 binding partner of ACD11 1 [Cucumis sativus]1.4e-12090.27Show/hide
Query:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF
        M+PGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIV             RSGEDACTAYVTFKDAYSQETACLLSGA IVDQRVCITRWGHF+DEFGF
Subjt:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF

Query:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH
        WSRP G+ EEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDM+GAG+EAVK+VDEKYH
Subjt:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH

Query:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH
        VL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAK AADLGSRGLEH
Subjt:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH

XP_008446330.1 PREDICTED: binding partner of ACD11 1 [Cucumis melo]4.4e-11989.49Show/hide
Query:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF
        M+PGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIV             RSG+DACTAYVTFKDAYSQETACLLSGA IVDQRVCITRWGHF+DEFGF
Subjt:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF

Query:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH
        WSRP G+ EEDST ASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLSHRIGLTDM+GAGFEAVK+VDEKYH
Subjt:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH

Query:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH
        VL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAK AADLGSRGLEH
Subjt:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH

XP_022945905.1 binding partner of ACD11 1-like [Cucurbita moschata]2.9e-11887.55Show/hide
Query:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF
        M+PGGYTVEVTGLSPKATEKD+LDFFAFSGAIELVEIV             RSGEDACTAYV+FKDAYSQETACLLSGATIVDQRVCITRWGHF++EF F
Subjt:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF

Query:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH
        WSRPSGYHEED TP SAQRSQF+S+AG AV+MAQ+VVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLS+RIGLTDMIGAG+EA KT+DEKYH
Subjt:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH

Query:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH
        VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAK AADLGSRGLEH
Subjt:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH

XP_022988849.1 binding partner of ACD11 1-like [Cucurbita maxima]2.9e-11889.11Show/hide
Query:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF
        M PGGYTVEVTGLSPKA EKDVLDFFAF G IELVEI+             RSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHF+DEFGF
Subjt:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF

Query:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH
        WSRPSGYHEEDST ASAQRSQFISSAGNAVTMAQEVVKTML+MGYVLGKD LTKAK FDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKT+DEKYH
Subjt:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH

Query:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH
        VLQTTKSAISATGRTAAAAADTVV+S YFSRGALF+SDALNRAAKVAADLGSRG+EH
Subjt:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH

XP_038892042.1 binding partner of ACD11 1 [Benincasa hispida]2.4e-12089.49Show/hide
Query:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF
        M+PGGYTVEVTGLSPKATEKDVLDFFAFSGAI+LVEI+             RSG+DACTAYVTFKDAYSQETACLLSGA I+DQRVCITRWG+F+DEFGF
Subjt:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF

Query:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH
        WSR SG+HEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKA DESHQVS TAAAKVADLSHRIGLTDMIGAGFEAVKT+DEKYH
Subjt:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH

Query:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH
        VLQTTKSAISATG+TAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH
Subjt:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH

TrEMBL top hitse value%identityAlignment
A0A0A0KSM6 RRM domain-containing protein6.7e-12190.27Show/hide
Query:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF
        M+PGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIV             RSGEDACTAYVTFKDAYSQETACLLSGA IVDQRVCITRWGHF+DEFGF
Subjt:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF

Query:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH
        WSRP G+ EEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDM+GAG+EAVK+VDEKYH
Subjt:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH

Query:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH
        VL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAK AADLGSRGLEH
Subjt:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH

A0A1S3BET5 binding partner of ACD11 12.1e-11989.49Show/hide
Query:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF
        M+PGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIV             RSG+DACTAYVTFKDAYSQETACLLSGA IVDQRVCITRWGHF+DEFGF
Subjt:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF

Query:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH
        WSRP G+ EEDST ASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLSHRIGLTDM+GAGFEAVK+VDEKYH
Subjt:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH

Query:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH
        VL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAK AADLGSRGLEH
Subjt:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH

A0A5D3CVI0 Binding partner of ACD11 12.1e-11989.49Show/hide
Query:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF
        M+PGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIV             RSG+DACTAYVTFKDAYSQETACLLSGA IVDQRVCITRWGHF+DEFGF
Subjt:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF

Query:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH
        WSRP G+ EEDST ASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLSHRIGLTDM+GAGFEAVK+VDEKYH
Subjt:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH

Query:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH
        VL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAK AADLGSRGLEH
Subjt:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH

A0A6J1G2B1 binding partner of ACD11 1-like1.4e-11887.55Show/hide
Query:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF
        M+PGGYTVEVTGLSPKATEKD+LDFFAFSGAIELVEIV             RSGEDACTAYV+FKDAYSQETACLLSGATIVDQRVCITRWGHF++EF F
Subjt:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF

Query:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH
        WSRPSGYHEED TP SAQRSQF+S+AG AV+MAQ+VVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLS+RIGLTDMIGAG+EA KT+DEKYH
Subjt:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH

Query:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH
        VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAK AADLGSRGLEH
Subjt:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH

A0A6J1JE77 binding partner of ACD11 1-like1.4e-11889.11Show/hide
Query:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF
        M PGGYTVEVTGLSPKA EKDVLDFFAF G IELVEI+             RSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHF+DEFGF
Subjt:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF

Query:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH
        WSRPSGYHEEDST ASAQRSQFISSAGNAVTMAQEVVKTML+MGYVLGKD LTKAK FDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKT+DEKYH
Subjt:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH

Query:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH
        VLQTTKSAISATGRTAAAAADTVV+S YFSRGALF+SDALNRAAKVAADLGSRG+EH
Subjt:  VLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH

SwissProt top hitse value%identityAlignment
P87216 Protein vip11.5e-0525.25Show/hide
Query:  VEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGY
        V VT +SP+ TEK + DFF+F G +  +                +SGE   TA + F+   + +TA LL  A +   ++ IT                  
Subjt:  VEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGY

Query:  HEEDSTPASAQRSQFISSAGNAVTMAQE------VVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYHV
          ED   AS         AG      QE      ++  +L+ GY L   TL K+   D+S+ VS+                 ++ +    V++V+E+YHV
Subjt:  HEEDSTPASAQRSQFISSAGNAVTMAQE------VVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYHV

Query:  LQ
         +
Subjt:  LQ

Q9LFD5 Binding partner of ACD11 12.5e-3237.01Show/hide
Query:  TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSG
        +V+V  LS  ATE D+ +FF+FSG +E ++I              +S E   +AYVTFK+    ETA LLSGA+I DQ V I    ++       S P+ 
Subjt:  TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSG

Query:  YHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGF----EAVKTVDEKYHVL
         H E  +          S A + V  A++VV +MLA G++LGKD + KAKAFDE H  ++TA A VA L  +IGL+  + AG     E +K VD+ + V 
Subjt:  YHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGF----EAVKTVDEKYHVL

Query:  QTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLE
        + TKS  +A  +T ++A   V+++ Y   G  + + A NR A+ A ++G +  E
Subjt:  QTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLE

Arabidopsis top hitse value%identityAlignment
AT1G14340.1 RNA-binding (RRM/RBD/RNP motifs) family protein9.0e-7862.55Show/hide
Query:  GYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRP
        GY VEVTGLSP  T  D++DFF+FSG I+ ++IV             RSGE ACTAYV FKD+YSQETA LL+GATI+DQRVCITRWG   +EF FW+  
Subjt:  GYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRP

Query:  S-GYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYHVLQ
        S G+ +E  +   AQRS+F  +AG AVT AQEVVK MLA G+VLGKD L+KAKAFDESH VSA A A+V+ L  RIGLTD I  G EAV+  D++YHV  
Subjt:  S-GYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYHVLQ

Query:  TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRG
        T KSA+ ATGRTAAAAA +VV SSYFS GAL++S AL RAAK A+DLG+RG
Subjt:  TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRG

AT3G01210.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-5248.3Show/hide
Query:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF
        M P GY  +VT LSP+ATEKDV  FF+  G +ELVEI   + C            DA TAYVTF+DAY+ + A LLSGATIVDQ V I+ +G +  E   
Subjt:  MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGF

Query:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH
            +   EED +    +   F SS G A+T+AQ+VV+TMLA GYVL KD + KAKA DES + S+  A K+A++SH +GLT  I +  E V++ DEKYH
Subjt:  WSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYH

Query:  VLQTTKSAI-----------SATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRG
            TKSA+           + TG+ AAAAA +VV S YF+ GAL+ SDAL RAAK AA +G  G
Subjt:  VLQTTKSAI-----------SATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRG

AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.7e-3436.86Show/hide
Query:  TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSG
        TV+V+ +S  AT++D+ +FF+FSG I              +       E    AYVTFKD    ETA LLSGATIVD  V ++    ++           
Subjt:  TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSG

Query:  YHEEDSTPASAQRSQFISSAGNAV-TMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGF----EAVKTVDEKYHV
           E       + S     AG++V   A++VV +MLA G++LGKD + KAK+ DE HQ+++TA+AKVA    +IG TD I  G     E V+ VD+KY V
Subjt:  YHEEDSTPASAQRSQFISSAGNAV-TMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGF----EAVKTVDEKYHV

Query:  LQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLE
         + TKSAI+A  +T + A   ++++ Y   GA +++ A N+ AK A ++G +  E
Subjt:  LQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLE

AT5G16840.1 binding partner of acd11 11.8e-3337.01Show/hide
Query:  TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSG
        +V+V  LS  ATE D+ +FF+FSG +E ++I              +S E   +AYVTFK+    ETA LLSGA+I DQ V I    ++       S P+ 
Subjt:  TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSG

Query:  YHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGF----EAVKTVDEKYHVL
         H E  +          S A + V  A++VV +MLA G++LGKD + KAKAFDE H  ++TA A VA L  +IGL+  + AG     E +K VD+ + V 
Subjt:  YHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGF----EAVKTVDEKYHVL

Query:  QTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLE
        + TKS  +A  +T ++A   V+++ Y   G  + + A NR A+ A ++G +  E
Subjt:  QTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLE

AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.6e-3435.43Show/hide
Query:  TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSG
        TV+V+ +S +ATE+D+ +FF+FSG I  +E                  + +  AYVTFKD    ETA LL+G+TIVD  V +T    ++        P  
Subjt:  TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSG

Query:  YHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAG----FEAVKTVDEKYHVL
            +S   S + S       +    A++VV  M++ G+VLGKD + KAK+ DE HQ+++TA+A+V     RIG T+ I  G     E VK VD+K+ V 
Subjt:  YHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAG----FEAVKTVDEKYHVL

Query:  QTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLE
        + TKSAI+A  +T + A   ++++ Y   GA +++ A NR +K A ++G +  E
Subjt:  QTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTGGTGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTCGTTGAGAT
TGTTAGGTATTCATTTTGTTCCGATTTCTGGTTTCATGAAAACAGATCTGGTGAAGATGCCTGCACTGCCTATGTGACATTCAAAGATGCTTATTCTCAAGAGACTGCTT
GCTTGCTGAGTGGTGCAACAATTGTAGATCAAAGAGTATGTATAACACGGTGGGGACATTTTGAGGACGAATTTGGTTTTTGGAGTAGGCCTTCTGGTTACCATGAAGAA
GACAGTACTCCTGCTTCGGCACAAAGAAGTCAGTTTATTTCCAGTGCTGGTAACGCAGTGACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGTT
GGGTAAAGATACATTAACCAAAGCCAAAGCCTTTGACGAATCTCATCAGGTTTCAGCAACGGCAGCAGCTAAGGTAGCAGATTTGAGTCATAGAATTGGCCTGACTGACA
TGATAGGTGCGGGTTTTGAAGCGGTTAAAACCGTGGATGAGAAGTACCATGTATTGCAGACCACCAAATCAGCTATATCAGCCACAGGAAGAACAGCCGCTGCCGCTGCA
GATACCGTGGTCAGGAGTAGCTACTTCTCTAGGGGAGCTCTTTTCATGTCTGATGCCCTGAATCGAGCAGCCAAAGTTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACA
TTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTGGTGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTCGTTGAGAT
TGTTAGGTATTCATTTTGTTCCGATTTCTGGTTTCATGAAAACAGATCTGGTGAAGATGCCTGCACTGCCTATGTGACATTCAAAGATGCTTATTCTCAAGAGACTGCTT
GCTTGCTGAGTGGTGCAACAATTGTAGATCAAAGAGTATGTATAACACGGTGGGGACATTTTGAGGACGAATTTGGTTTTTGGAGTAGGCCTTCTGGTTACCATGAAGAA
GACAGTACTCCTGCTTCGGCACAAAGAAGTCAGTTTATTTCCAGTGCTGGTAACGCAGTGACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGTT
GGGTAAAGATACATTAACCAAAGCCAAAGCCTTTGACGAATCTCATCAGGTTTCAGCAACGGCAGCAGCTAAGGTAGCAGATTTGAGTCATAGAATTGGCCTGACTGACA
TGATAGGTGCGGGTTTTGAAGCGGTTAAAACCGTGGATGAGAAGTACCATGTATTGCAGACCACCAAATCAGCTATATCAGCCACAGGAAGAACAGCCGCTGCCGCTGCA
GATACCGTGGTCAGGAGTAGCTACTTCTCTAGGGGAGCTCTTTTCATGTCTGATGCCCTGAATCGAGCAGCCAAAGTTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACA
TTAGTGAGAGAGAGTGCTTCTACTCATCCATTTGTAAATAAAGAAATTTAAATGCATACCTAAATTTGCAAGTATTACGATATTTTACCAGAGCGTACATTCATCTGAAA
GCTGTATGTATAAGTTTAAACTTTACATTTCATAGAGTTCAATGACACGTACTAGTCATTTGACCCCACAAGTTTTGCTAAATTTTGAGCCCAAATTTGGTAAAATTCGA
TCAGAGATGGTCTTTATTGAGTCATTTTGTCAGTTTGTAAATTCAGTATCCTTGGAGTCAAATCTATTCTTTTAGCACTCTTGGAAACGTCTC
Protein sequenceShow/hide protein sequence
MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEE
DSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAA
DTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH