; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G004610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G004610
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPentatricopeptide repeat (PPR) superfamily protein
Genome locationchr04:4392187..4392677
RNA-Seq ExpressionLsi04G004610
SyntenyLsi04G004610
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR032867 - DYW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034379.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.2e-6594.53Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        VNGEVHEFFVGDKSHP YDAIET+WGEISKRLKL GYVA+TN VLFDI EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        IF REIIVRDRNRFHHFKDGECSCKDFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

XP_008446300.1 PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis melo]3.2e-6594.53Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        VNGEVHEFFVGDKSHP YDAIET+WGEISKRLKL GYVA+TN VLFDI EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        IF REIIVRDRNRFHHFKDGECSCKDFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

XP_022151045.1 putative pentatricopeptide repeat-containing protein At5g40405 [Momordica charantia]7.6e-6795.31Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        VNGEVHEFFVGDKSHP YDAIET+WG+ISKRLKL GYVANTNPVLFDI EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        IFNREIIVRDRNRFHHF+DGECSCKDFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

XP_022944963.1 putative pentatricopeptide repeat-containing protein At5g40405 [Cucurbita moschata]2.3e-6388.28Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        VNGEVHEFFVGDKSHP Y AIE +WGEISKRLKL GYVANTNPV+FD+ EEEKEDALCKHSEKMAIAFGL+S++EGLPIR+VKNLRVCWDCHDVTKMISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        +FNREII+RDRNRFHHF+DGECSCKDFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

XP_038891785.1 putative pentatricopeptide repeat-containing protein At5g40405 [Benincasa hispida]9.3e-6592.97Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        VNGEVHEFFVGDKSHP Y AIET+WGEIS++LKL GYVANTNPVLFDI EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        IF+REIIVRDRNRFHHFKDG+CSCKDFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

TrEMBL top hitse value%identityAlignment
A0A0A0KSJ7 DYW_deaminase domain-containing protein2.5e-6390.62Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        VNGEVHEFF GDKSHP YD IET+WGEISKRLKL GYVA+TN VLFDI EEEKEDALCKHSEKMAIAFGL SLKEGLPIRIVKNLR+CWDCHDV+KMISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        IF REIIVRDRNRFHHFKDGECSCKDFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

A0A1S3BFJ2 putative pentatricopeptide repeat-containing protein At5g404051.5e-6594.53Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        VNGEVHEFFVGDKSHP YDAIET+WGEISKRLKL GYVA+TN VLFDI EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        IF REIIVRDRNRFHHFKDGECSCKDFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

A0A5A7SZ47 Putative pentatricopeptide repeat-containing protein1.5e-6594.53Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        VNGEVHEFFVGDKSHP YDAIET+WGEISKRLKL GYVA+TN VLFDI EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        IF REIIVRDRNRFHHFKDGECSCKDFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

A0A6J1DA54 putative pentatricopeptide repeat-containing protein At5g404053.7e-6795.31Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        VNGEVHEFFVGDKSHP YDAIET+WG+ISKRLKL GYVANTNPVLFDI EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        IFNREIIVRDRNRFHHF+DGECSCKDFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

A0A6J1FZH3 putative pentatricopeptide repeat-containing protein At5g404051.1e-6388.28Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        VNGEVHEFFVGDKSHP Y AIE +WGEISKRLKL GYVANTNPV+FD+ EEEKEDALCKHSEKMAIAFGL+S++EGLPIR+VKNLRVCWDCHDVTKMISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        +FNREII+RDRNRFHHF+DGECSCKDFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

SwissProt top hitse value%identityAlignment
A8MQA3 Pentatricopeptide repeat-containing protein At4g210656.9e-3957.25Show/hide
Query:  MCNVNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKM
        +  V   VHEF +GDKSHP+ DAI     E++ RL+  GYV   + V  D+ EEEKE+A+  HSEK+AIAF LIS  E  PI +VKNLRVC DCH   K+
Subjt:  MCNVNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKM

Query:  ISKIFNREIIVRDRNRFHHFKDGECSCKDFW
        +SK++NREI+VRDR+RFHHFK+G CSC+D+W
Subjt:  ISKIFNREIIVRDRNRFHHFKDGECSCKDFW

Q683I9 Pentatricopeptide repeat-containing protein At3g628904.1e-3958.59Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        V G VHEF VGD+S    + I  +  EI +RL+  GYV +T  VL D+ E++KE AL  HSEK+AIAF L+  + G P+RI+KNLR+C DCH V KMISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        +F+REI+VRD NRFHHF+DG CSC+DFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

Q9FND7 Putative pentatricopeptide repeat-containing protein At5g404058.2e-5677.34Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        VNGEVHEFFVGDKSHP+Y  I+ +W +IS+RL+L GY A+T PV+FDI EEEKEDALC HSEK AIAFG++SLKE +PIRIVKNLRVC DCH V+ MISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        IFNREIIVRDRNRFHHFKDG CSC  FW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

Q9LTV8 Pentatricopeptide repeat-containing protein At3g127705.3e-3958.59Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        V G +  F VGDKSHPRY+ IE     I  RLK  G+VAN +  L D+ +EE E+ LC HSE++AIA+GLIS  +G P+RI KNLR C +CH  TK+ISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        + +REI+VRD NRFHHFKDG CSC D+W
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

Q9SZT8 Pentatricopeptide repeat-containing protein ELI1, chloroplastic6.3e-4060.16Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEE-EKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        +  +VHEF  GD+ H +   I T+  +IS+R+K  GYV NTN VL D+EE EKE +L  HSE++AIA+GLIS K G P++I KNLRVC DCH VTK+ISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEE-EKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        I  R+I++RDRNRFHHF DG CSC DFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

Arabidopsis top hitse value%identityAlignment
AT3G12770.1 mitochondrial editing factor 223.8e-4058.59Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        V G +  F VGDKSHPRY+ IE     I  RLK  G+VAN +  L D+ +EE E+ LC HSE++AIA+GLIS  +G P+RI KNLR C +CH  TK+ISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        + +REI+VRD NRFHHFKDG CSC D+W
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein2.9e-4058.59Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        V G VHEF VGD+S    + I  +  EI +RL+  GYV +T  VL D+ E++KE AL  HSEK+AIAF L+  + G P+RI+KNLR+C DCH V KMISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        +F+REI+VRD NRFHHF+DG CSC+DFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.9e-4057.25Show/hide
Query:  MCNVNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKM
        +  V   VHEF +GDKSHP+ DAI     E++ RL+  GYV   + V  D+ EEEKE+A+  HSEK+AIAF LIS  E  PI +VKNLRVC DCH   K+
Subjt:  MCNVNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKM

Query:  ISKIFNREIIVRDRNRFHHFKDGECSCKDFW
        +SK++NREI+VRDR+RFHHFK+G CSC+D+W
Subjt:  ISKIFNREIIVRDRNRFHHFKDGECSCKDFW

AT4G37380.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.5e-4160.16Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEE-EKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        +  +VHEF  GD+ H +   I T+  +IS+R+K  GYV NTN VL D+EE EKE +L  HSE++AIA+GLIS K G P++I KNLRVC DCH VTK+ISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEE-EKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        I  R+I++RDRNRFHHF DG CSC DFW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW

AT5G40405.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.8e-5777.34Show/hide
Query:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK
        VNGEVHEFFVGDKSHP+Y  I+ +W +IS+RL+L GY A+T PV+FDI EEEKEDALC HSEK AIAFG++SLKE +PIRIVKNLRVC DCH V+ MISK
Subjt:  VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK

Query:  IFNREIIVRDRNRFHHFKDGECSCKDFW
        IFNREIIVRDRNRFHHFKDG CSC  FW
Subjt:  IFNREIIVRDRNRFHHFKDGECSCKDFW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAATGTCAATGGAGAAGTTCACGAATTCTTTGTAGGAGACAAGTCTCACCCGCGTTATGACGCCATCGAAACGATATGGGGAGAGATTTCTAAACGGCTAAAGTT
AGTAGGATACGTCGCAAATACTAACCCTGTTCTCTTTGATATAGAAGAAGAAAAGGAAGATGCTTTGTGTAAACATAGCGAGAAGATGGCCATTGCATTTGGATTGATTA
GTCTGAAGGAGGGGTTGCCCATTAGAATAGTGAAGAACCTCAGAGTTTGTTGGGATTGCCATGATGTTACAAAGATGATATCTAAAATTTTTAACAGGGAGATTATTGTG
AGAGATAGGAACAGATTTCACCATTTTAAAGATGGCGAGTGTTCTTGTAAGGATTTTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAATGTCAATGGAGAAGTTCACGAATTCTTTGTAGGAGACAAGTCTCACCCGCGTTATGACGCCATCGAAACGATATGGGGAGAGATTTCTAAACGGCTAAAGTT
AGTAGGATACGTCGCAAATACTAACCCTGTTCTCTTTGATATAGAAGAAGAAAAGGAAGATGCTTTGTGTAAACATAGCGAGAAGATGGCCATTGCATTTGGATTGATTA
GTCTGAAGGAGGGGTTGCCCATTAGAATAGTGAAGAACCTCAGAGTTTGTTGGGATTGCCATGATGTTACAAAGATGATATCTAAAATTTTTAACAGGGAGATTATTGTG
AGAGATAGGAACAGATTTCACCATTTTAAAGATGGCGAGTGTTCTTGTAAGGATTTTTGGTGA
Protein sequenceShow/hide protein sequence
MCNVNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIV
RDRNRFHHFKDGECSCKDFW