CuGenDBv2

Gene ID	Lsi04G004700
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	RRM domain-containing protein
Genome location	chr04:4413536..4414442
RNA-Seq Expression	Lsi04G004700
Synteny	Lsi04G004700
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYK15537.1 thaumatin-like protein 1 [Cucumis melo var. makuwa]

2.5e-90

90.21

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Query:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPSSHLPTS AKRRRPPP     T D+D++KP+SKPAPPLALV+VDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL
        AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVN R+SNSSSRSDVPF GREVVAYDD+L
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL

XP_008446301.1 PREDICTED: uncharacterized protein At1g27050 [Cucumis melo]

2.5e-90

90.21

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Query:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPSSHLPTS AKRRRPPP     T D+D++KP+SKPAPPLALV+VDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL
        AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVN R+SNSSSRSDVPF GREVVAYDD+L
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL

XP_011655662.1 uncharacterized protein At1g27050 [Cucumis sativus]

2.5e-90

89.69

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Query:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPSSHLPTS  KRRRPPP     TE++D++KP+SKPAPPLALV+VDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL
        AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLAS IVN R+SNSSSRSDVPF GREVVAYDD+L
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL

XP_023000221.1 uncharacterized protein At1g27050 [Cucurbita maxima]

1.4e-88

89.18

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Query:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPS+H  TS AKRRR  PPA    ED+D+DKPL KPAPPLALV+VDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVN RKSNSSSRSD PF GREVVAYDD+L
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL

XP_038892024.1 uncharacterized protein At1g27050 [Benincasa hispida]

5.6e-98

96.39

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Query:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPSSHLPTS AKRRRPPPPAPS TEDEDMDKPLSKPAPPLALV+VDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
Subjt:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL
        AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVN R+SNSSSRSDVPF GREVVAYDD+L
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTW9 RRM domain-containing protein

1.2e-90

89.69

Show/hide

Query:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPSSHLPTS  KRRRPPP     TE++D++KP+SKPAPPLALV+VDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL
        AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLAS IVN R+SNSSSRSDVPF GREVVAYDD+L
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL

A0A1S3BE88 uncharacterized protein At1g27050

1.2e-90

90.21

Show/hide

Query:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPSSHLPTS AKRRRPPP     T D+D++KP+SKPAPPLALV+VDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL
        AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVN R+SNSSSRSDVPF GREVVAYDD+L
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL

A0A5A7STE1 Homeobox-leucine zipper protein ATHB-54

1.2e-90

90.21

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Query:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPSSHLPTS AKRRRPPP     T D+D++KP+SKPAPPLALV+VDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL
        AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVN R+SNSSSRSDVPF GREVVAYDD+L
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL

A0A5D3CUC0 Thaumatin-like protein 1

1.2e-90

90.21

Show/hide

Query:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPSSHLPTS AKRRRPPP     T D+D++KP+SKPAPPLALV+VDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL
        AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVN R+SNSSSRSDVPF GREVVAYDD+L
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL

A0A6J1KFA1 uncharacterized protein At1g27050

6.6e-89

89.18

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Query:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPS+H  TS AKRRR  PPA    ED+D+DKPL KPAPPLALV+VDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVN RKSNSSSRSD PF GREVVAYDD+L
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL

SwissProt top hits

e value

%identity

Alignment

P0CJ66 Uncharacterized protein At1g27050

8.5e-49

50.97

Show/hide

Query:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPY + H P   +KRRRP  P+ S   DE +DKP++KP PP ALV++ LP++CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A
Subjt:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSN----------SSSRSDVPFSGREVV
         + +PSF  +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVN R  N          SS  +      R +V
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSN----------SSSRSDVPFSGREVV

Query:  AYDDLL
         YDD++
Subjt:  AYDDLL

Arabidopsis top hits

e value

%identity

Alignment

AT1G27050.1 homeobox protein 54

6.0e-50

50.97

Show/hide

Query:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPY + H P   +KRRRP  P+ S   DE +DKP++KP PP ALV++ LP++CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A
Subjt:  MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSN----------SSSRSDVPFSGREVV
         + +PSF  +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVN R  N          SS  +      R +V
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSN----------SSSRSDVPFSGREVV

Query:  AYDDLL
         YDD++
Subjt:  AYDDLL

Sequences

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CDS sequence

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ATGGGTCGCAAGAGAGATAAACCCTACCCTTCCTCCCACCTTCCTACCTCCGGCGCTAAGAGACGACGCCCTCCGCCGCCCGCACCGTCGCATACGGAGGACGAGGATAT
GGACAAGCCCTTGTCGAAGCCTGCGCCACCGCTTGCCCTAGTCATCGTTGACCTACCTTCACACTGTTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCA
TCTCCCGAATCCGAATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACTAAAGACTCCGCTGATGCTGCCATGGCCGCCGCCCTTGATCCCTCCTTCGCCTTCACC
ATTGATTCCAAAAAGGTTCAGGTACTATGGGCGAATGATCCTCAAGTCCAATGGCGACAAGGGATTAACGTTGGTGTTAACAAAAATAAGGAATTGTCTTCAAAGCTCTT
GCGGGCAGAAGTGCCACTGAGCAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACTCCAGAAAAAGCAACAGTTCTTCAAGGTCGGATGTGCCTTTCAGCG
GCAGGGAAGTTGTTGCTTACGATGATCTTCTCTAA

mRNA sequence

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Protein sequence

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MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFT
IDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL

Lsi04G004700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome