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Lsi04G004880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G004880
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTetratricopeptide repeat protein 38
Genome locationchr04:4515960..4516752
RNA-Seq ExpressionLsi04G004880
SyntenyLsi04G004880
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR033891 - Tetratricopeptide repeat protein 38


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135208.1 tetratricopeptide repeat protein 38 [Cucumis sativus]9.9e-1595.56Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+YKYGRGDYE ALDLLGLDFDANDYKMIGASNEQLDVFNEV
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

XP_008446289.1 PREDICTED: tetratricopeptide repeat protein 38 isoform X1 [Cucumis melo]1.2e-1597.78Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+YKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

XP_016900308.1 PREDICTED: tetratricopeptide repeat protein 38 isoform X2 [Cucumis melo]1.2e-1597.78Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+YKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

XP_038891806.1 tetratricopeptide repeat protein 38 isoform X1 [Benincasa hispida]2.2e-1495.56Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+YKYGRGDYE ALDLLGLDFDANDYKMIGASNEQLDVFNEV
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

XP_038891807.1 tetratricopeptide repeat protein 38 isoform X2 [Benincasa hispida]2.2e-1495.56Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+YKYGRGDYE ALDLLGLDFDANDYKMIGASNEQLDVFNEV
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

TrEMBL top hitse value%identityAlignment
A0A0A0KSI1 Tetratricopeptide repeat protein 384.8e-1595.56Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+YKYGRGDYE ALDLLGLDFDANDYKMIGASNEQLDVFNEV
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

A0A1S3BFD6 Tetratricopeptide repeat protein 385.7e-1697.78Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+YKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

A0A1S4DWG1 Tetratricopeptide repeat protein 385.7e-1697.78Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+YKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

A0A5A7STS3 Tetratricopeptide repeat protein 385.7e-1697.78Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+YKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

A0A6J1DC80 Tetratricopeptide repeat protein 382.4e-1491.11Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+YKYGRGDY+ ALDLLGLDFDANDYKMIGASNEQ+DVFNEV
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27110.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.9e-1268.89Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+Y+YG+G+YE AL+LLGLDFDA +YK+IG S  Q+DVFNE+
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

AT1G27110.2 Tetratricopeptide repeat (TPR)-like superfamily protein2.9e-1268.89Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+Y+YG+G+YE AL+LLGLDFDA +YK+IG S  Q+DVFNE+
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

AT1G27110.3 Tetratricopeptide repeat (TPR)-like superfamily protein2.9e-1268.89Show/hide
Query:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        LAEA+Y+YG+G+YE AL+LLGLDFDA +YK+IG S  Q+DVFNE+
Subjt:  LAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV

AT1G27150.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.4e-1163.04Show/hide
Query:  QLAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV
        QL EA+Y+Y RG+YE AL+LLG +F+A  YK++GAS+EQ+DVFNE+
Subjt:  QLAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATAAAATTATTTTCAATTTTCAACTACTTTATGTTGGTACAATTGCACAAATCTGTTAAATCCATCTTGTCAACTGCTTTTAGTGAACAGACCCTCAAGACAAG
TTTATTTTTCCTTTTCAATTTCGTGGCCTTATTTGTGTATTCCCAGCTTGCAGAAGCTATCTACAAGTACGGGAGAGGAGATTACGAACATGCATTAGACTTGCTCGGTC
TGGATTTTGATGCAAATGACTACAAGATGATTGGTGCATCAAATGAACAACTCGACGTATTTAATGAAGTATGCAATCGAAGTAATCGACAAACAGATCAAGAAAAGGGA
AGCAGTCCCATATCTGTGGCGTCTTCTGGTACAAATGCTTCTCTCATGTTCCGCTATAATGATTGCAGTTACAAGTTTTTCAATGAAAATGTAACCATTTCAACTCCTGC
AGGAGAGGGGGTACAGCAAAATTGGAAGGCCAGAGGAAGCTGCCATTGCAGGAGACAAAGCCAGGAGCTTGGAGAAGGCACATTTCAAGTAATTACCTTGAAGTTGCAAG
TCTTCATGATCTTGTATCAAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGATAAAATTATTTTCAATTTTCAACTACTTTATGTTGGTACAATTGCACAAATCTGTTAAATCCATCTTGTCAACTGCTTTTAGTGAACAGACCCTCAAGACAAG
TTTATTTTTCCTTTTCAATTTCGTGGCCTTATTTGTGTATTCCCAGCTTGCAGAAGCTATCTACAAGTACGGGAGAGGAGATTACGAACATGCATTAGACTTGCTCGGTC
TGGATTTTGATGCAAATGACTACAAGATGATTGGTGCATCAAATGAACAACTCGACGTATTTAATGAAGTATGCAATCGAAGTAATCGACAAACAGATCAAGAAAAGGGA
AGCAGTCCCATATCTGTGGCGTCTTCTGGTACAAATGCTTCTCTCATGTTCCGCTATAATGATTGCAGTTACAAGTTTTTCAATGAAAATGTAACCATTTCAACTCCTGC
AGGAGAGGGGGTACAGCAAAATTGGAAGGCCAGAGGAAGCTGCCATTGCAGGAGACAAAGCCAGGAGCTTGGAGAAGGCACATTTCAAGTAATTACCTTGAAGTTGCAAG
TCTTCATGATCTTGTATCAAAGCTGA
Protein sequenceShow/hide protein sequence
MLIKLFSIFNYFMLVQLHKSVKSILSTAFSEQTLKTSLFFLFNFVALFVYSQLAEAIYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEVCNRSNRQTDQEKG
SSPISVASSGTNASLMFRYNDCSYKFFNENVTISTPAGEGVQQNWKARGSCHCRRQSQELGEGTFQVITLKLQVFMILYQS