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Lsi04G005160 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G005160
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein PLASTID REDOX INSENSITIVE 2-like
Genome locationchr04:4793788..4795258
RNA-Seq ExpressionLsi04G005160
SyntenyLsi04G005160
Gene Ontology termsGO:0010468 - regulation of gene expression (biological process)
InterPro domainsIPR039349 - Protein PLASTID REDOX INSENSITIVE 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601371.1 Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.8e-7281.4Show/hide
Query:  MALYGCALVSSIAVSPAKITSFNGFHYPTF--SSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDS
        MA Y C LVS+IAVSPAK T FNG +YPTF  SS    V PFVN TLTSS IYRAT  PA+ VYP+PIPEFAE ETKKFK QL KKLAKDRETFGNDLDS
Subjt:  MALYGCALVSSIAVSPAKITSFNGFHYPTF--SSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDS

Query:  VVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK
        VV+VCSKIF EYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQN+LDHDW +W SK GLK
Subjt:  VVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK

XP_004135230.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic isoform X1 [Cucumis sativus]4.4e-7583.53Show/hide
Query:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV
        MA YG ALVS++ VSPAKI  FNG HYPTF  F  FVKP VN TLTSS IYRAT I ASYVYPEPIPEFAE ET+KFK QL KKLAKDRETFGND DSVV
Subjt:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV

Query:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK
        DVCSKIFGEYLHVEYGGPGTL+VEPFTNMFIALNERKL GAPLAARTSLLWAQNHLD+DW +WNSKGG K
Subjt:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK

XP_008446243.1 PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo]1.9e-7886.47Show/hide
Query:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV
        MA YGCALVS+I VSPAKITSFNG HYPTFS F  FVKP VN TLTSS IYRAT I ASYVYPEPIPEFAE ET+KFK QL KKLAKDRETFGND DSVV
Subjt:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV

Query:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK
        DVCSKIFGEYLHVEYGGPGTL+VEPFTNMFIALNERKLPGAPLAARTSLLWAQN+LD+DW +WNSKGG K
Subjt:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK

XP_023513727.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo]1.1e-7080.92Show/hide
Query:  MALYGCALVSSIAVSPAKITSFNGFHYPTF---SSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLD
        MA Y C LVS+IAVSPAK T FNG +YPTF   SS    VKPFVN TLTSS IYRAT   AS VY +PIPEFAE ETKKFK QL KKLAKDRETFGNDLD
Subjt:  MALYGCALVSSIAVSPAKITSFNGFHYPTF---SSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLD

Query:  SVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK
        SVV+VCSKIF EYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQN+LDHDW +W SK GLK
Subjt:  SVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK

XP_038891536.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Benincasa hispida]2.1e-8088.82Show/hide
Query:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV
        MA YGCALV +IAVSPAKITSFNG HYP FS+F  FVKPFVN TLTSSFIYRAT IPASYVYPEPIPEFAE ET+KFK QL KKLAKDRETFGNDLDSVV
Subjt:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV

Query:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK
        DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGA LAARTSLLWAQNHLDHDW +WN KG LK
Subjt:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK

TrEMBL top hitse value%identityAlignment
A0A1S3BEK8 uncharacterized protein LOC103489034 isoform X19.3e-7986.47Show/hide
Query:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV
        MA YGCALVS+I VSPAKITSFNG HYPTFS F  FVKP VN TLTSS IYRAT I ASYVYPEPIPEFAE ET+KFK QL KKLAKDRETFGND DSVV
Subjt:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV

Query:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK
        DVCSKIFGEYLHVEYGGPGTL+VEPFTNMFIALNERKLPGAPLAARTSLLWAQN+LD+DW +WNSKGG K
Subjt:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK

A0A5A7SZ04 Uncharacterized protein9.3e-7986.47Show/hide
Query:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV
        MA YGCALVS+I VSPAKITSFNG HYPTFS F  FVKP VN TLTSS IYRAT I ASYVYPEPIPEFAE ET+KFK QL KKLAKDRETFGND DSVV
Subjt:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV

Query:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK
        DVCSKIFGEYLHVEYGGPGTL+VEPFTNMFIALNERKLPGAPLAARTSLLWAQN+LD+DW +WNSKGG K
Subjt:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK

A0A6J1DB25 protein PLASTID REDOX INSENSITIVE 2-like1.9e-6877.84Show/hide
Query:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV
        MAL+GCAL+ + AV PAKIT FNG  +PTFS F   VKPFVN T TSSF YRAT +P  +VYP+PIPEFAEAET+KF+  L KKLA+DR TFGNDLD VV
Subjt:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV

Query:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKG
        +VCSKIFGEYLHVEYGGP TLLVEPFTNMFIALNERKLPGA LAARTSLLWAQNHLD DW +WNSKG
Subjt:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKG

A0A6J1GYK9 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X13.5e-7080.35Show/hide
Query:  MALYGCALVSSIAVSPAKITSFNGFHYPT-FSSFQPFVKPFVNSTLTSSFIYRATLIP--ASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLD
        MA Y C LVS+IAVSPAK T FNG +YPT F S    V PFVN TLTSS IYRAT  P  A+ VYP+PIPEFAE ETKKFK QL KKLAKDRETFGNDLD
Subjt:  MALYGCALVSSIAVSPAKITSFNGFHYPT-FSSFQPFVKPFVNSTLTSSFIYRATLIP--ASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLD

Query:  SVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK
        SVV+VCSKIF EYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQN+LDHDW +W SK GLK
Subjt:  SVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK

A0A6J1JDH3 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X12.1e-7080Show/hide
Query:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV
        MA Y C LVS+IAVSPAK T FNG +YPTFS      KPFVN TLTSS IYRAT   AS VY +PIPEFAE ET+KFK QL KKLAKDRETFGNDLDSVV
Subjt:  MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVV

Query:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK
        +VCSKIF EYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLA RTSLLWAQN+LDHDW +W SK GLK
Subjt:  DVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK

SwissProt top hitse value%identityAlignment
B6UFC7 Protein PLASTID REDOX INSENSITIVE 2, chloroplastic5.2e-2648.15Show/hide
Query:  YVYPEPIPEFAEAETKKFKVQLLKKLAKDRET-FGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDH
        Y +P+PIPEFAE ET KF+  +  +L + +E  FG+ ++ +VDVC++I G +L  +Y GPGTLLV PF +M   + ER LPGAP AAR ++ WA+ ++D 
Subjt:  YVYPEPIPEFAEAETKKFKVQLLKKLAKDRET-FGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDH

Query:  DWKVWNSK
        DWK W  +
Subjt:  DWKVWNSK

Q6H612 Protein PLASTID REDOX INSENSITIVE 2, chloroplastic1.5e-2547.22Show/hide
Query:  YVYPEPIPEFAEAETKKFKVQLLKKLAKDRET-FGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDH
        Y +P+PIPEFA  ET KFK  ++ +L + ++  FG  ++ +VDVC++I G +L  +Y GPGTLLV PF +M   + ER LPGAP AAR ++ WA+ ++D 
Subjt:  YVYPEPIPEFAEAETKKFKVQLLKKLAKDRET-FGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDH

Query:  DWKVWNSK
        DWK W  +
Subjt:  DWKVWNSK

Q9XIK0 Protein PLASTID REDOX INSENSITIVE 2, chloroplastic1.2e-3046.3Show/hide
Query:  YGCAL--VSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVD
        + CAL  +SS A     I S   F     +  + F    ++S     F+ RA    A Y +P+PIPEFAEAET+KF+  +L KL+K R+ F + +D +V 
Subjt:  YGCAL--VSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVD

Query:  VCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVW
        VC++IF  +L  EYGGPGTLLV PF +M   LNER+LPG P AAR ++ WAQ+H+D DWK W
Subjt:  VCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVW

Arabidopsis top hitse value%identityAlignment
AT1G10522.1 unknown protein8.4e-3246.3Show/hide
Query:  YGCAL--VSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVD
        + CAL  +SS A     I S   F     +  + F    ++S     F+ RA    A Y +P+PIPEFAEAET+KF+  +L KL+K R+ F + +D +V 
Subjt:  YGCAL--VSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVD

Query:  VCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVW
        VC++IF  +L  EYGGPGTLLV PF +M   LNER+LPG P AAR ++ WAQ+H+D DWK W
Subjt:  VCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVW

AT1G10522.2 unknown protein8.4e-3246.3Show/hide
Query:  YGCAL--VSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVD
        + CAL  +SS A     I S   F     +  + F    ++S     F+ RA    A Y +P+PIPEFAEAET+KF+  +L KL+K R+ F + +D +V 
Subjt:  YGCAL--VSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVD

Query:  VCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVW
        VC++IF  +L  EYGGPGTLLV PF +M   LNER+LPG P AAR ++ WAQ+H+D DWK W
Subjt:  VCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTCTACGGTTGCGCTCTGGTCTCATCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCAACATTTTCCTCTTTCCAGCCTTTCGT
TAAGCCCTTCGTTAATTCTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCTGATCCCCGCCAGCTATGTTTACCCAGAACCGATACCGGAATTTGCAGAAGCTGAAA
CCAAGAAATTTAAGGTGCAGTTATTGAAGAAACTAGCGAAGGATCGCGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGATATTTGGTGAATAT
TTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTTAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCGCTAGAAC
TTCGCTCCTATGGGCTCAAAACCATCTAGATCACGATTGGAAAGTTTGGAACTCAAAAGGAGGGCTCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATTCTCCAAGGCCTAGAGTGGACAAATAAAGAGTCTTCTTTTTAATCATTATTATTTATTTATCTTCCTTACTTTCATCATCATCATCATCTACTTCTCTTGTTTTCCCT
AAATTTTAACATTTCCTCTTTTTTCTTTTAAAAAATTCTACTTTAATTAAATTATGCTGTTTATTAATTATTTGAAAATTCTGAAGTGAGCTGGACACACTAAATTTAGA
CAACTGGGCTGAATTTGGCCCATCTGCACCTGGGTAATTTGATGAGCGTTTTGGCTTGGGCCAGTCCTTCTACATTTACAGGGTAGAAGGCCCAAACGTAGGTGGGCTTT
GGCCCAAGAACGAGCAACGGACTCTCCATGGGCTTTACAAATCAACGCTACACGAAATTAGGGCTTAACTTAGGAGCGGGATAACCCCATCCAATGGCGCTCTACGGTTG
CGCTCTGGTCTCATCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCAACATTTTCCTCTTTCCAGCCTTTCGTTAAGCCCTTCGTTAATT
CTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCTGATCCCCGCCAGCTATGTTTACCCAGAACCGATACCGGAATTTGCAGAAGCTGAAACCAAGAAATTTAAGGTG
CAGTTATTGAAGAAACTAGCGAAGGATCGCGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGATATTTGGTGAATATTTGCATGTGGAGTACGG
AGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTTAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCGCTAGAACTTCGCTCCTATGGGCTC
AAAACCATCTAGATCACGATTGGAAAGTTTGGAACTCAAAAGGAGGGCTCAAATGA
Protein sequenceShow/hide protein sequence
MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEY
LHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK