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Lsi04G005260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G005260
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor PAR1-like
Genome locationchr04:4874929..4875183
RNA-Seq ExpressionLsi04G005260
SyntenyLsi04G005260
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032147.1 hypothetical protein SDJN02_06190, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-3184.09Show/hide
Query:  MEYYNNCESKGIGKVKWQRRGRRGGRHGGG----SIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS
        MEYYN  E++GI KVKWQRRGRRGGRHGGG    S+ +K+RKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDP+LS
Subjt:  MEYYNNCESKGIGKVKWQRRGRRGGRHGGG----SIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS

XP_011655641.1 uncharacterized protein LOC105435564 [Cucumis sativus]6.0e-3387.21Show/hide
Query:  EYYNNCESKGIGKVKWQRRGRRGGRH---GGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS
        +YY+ CESKGIGKV+WQRRGRRGGRH   GGGS+ +KMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDP LS
Subjt:  EYYNNCESKGIGKVKWQRRGRRGGRH---GGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS

XP_022957171.1 transcription factor PAR2-like [Cucurbita moschata]8.7e-3284.52Show/hide
Query:  MEYYNNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS
        MEYYN  E++GI KVKWQRRGRRGGRHGG S+ +K+RKLQR+IPGGRRLKPDRLFLKTADYIMQLRSQVHVL ALSKIYDP+LS
Subjt:  MEYYNNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS

XP_023513052.1 transcription factor PAR2-like [Cucurbita pepo subsp. pepo]1.1e-3185.06Show/hide
Query:  MEYYNNCESKGIGKVKWQRRGRRGGRHGGG---SIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS
        MEYYN  E++GI KVKWQRRGRRGGRHGGG   S+ +K+RKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDP+LS
Subjt:  MEYYNNCESKGIGKVKWQRRGRRGGRHGGG---SIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS

XP_038891463.1 transcription factor PAR2 [Benincasa hispida]1.1e-3492.86Show/hide
Query:  MEYYNNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS
        MEYYN+CESKGIG VKWQRRGRRGGRH G S+Q+KMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS
Subjt:  MEYYNNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS

TrEMBL top hitse value%identityAlignment
A0A0A0KQB4 Uncharacterized protein2.9e-3387.21Show/hide
Query:  EYYNNCESKGIGKVKWQRRGRRGGRH---GGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS
        +YY+ CESKGIGKV+WQRRGRRGGRH   GGGS+ +KMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDP LS
Subjt:  EYYNNCESKGIGKVKWQRRGRRGGRH---GGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS

A0A1S3BFE3 uncharacterized protein LOC1034890267.2e-3285.06Show/hide
Query:  YYNNCESKGIGKVKWQRRGRRGGRH-----GGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS
        YY+ CES GIGKV+WQRRGRRGGRH     GGGS+ +KMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDP LS
Subjt:  YYNNCESKGIGKVKWQRRGRRGGRH-----GGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS

A0A6J1DDZ5 transcription factor PAR21.2e-2981.61Show/hide
Query:  MEYY----NNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRL
        MEYY     + +  GIGKVKWQRRGRRGGRHGGGS+Q+KMRKLQRLIPGGR LKPDRLFLKTADYIMQLRSQV+VLQALSKIY+P L
Subjt:  MEYY----NNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRL

A0A6J1GYH6 transcription factor PAR2-like4.2e-3284.52Show/hide
Query:  MEYYNNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS
        MEYYN  E++GI KVKWQRRGRRGGRHGG S+ +K+RKLQR+IPGGRRLKPDRLFLKTADYIMQLRSQVHVL ALSKIYDP+LS
Subjt:  MEYYNNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS

A0A6J1IR24 uncharacterized protein LOC1114776747.2e-3288.24Show/hide
Query:  MEYYNNCESKGIGKVKWQRRGRRGGRHGG-GSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS
        MEYYN  E+KGI KVKWQRRGRRGG HGG  S+ +KMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS
Subjt:  MEYYNNCESKGIGKVKWQRRGRRGGRHGG-GSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G23965.1 unknown protein1.8e-1153.42Show/hide
Query:  ESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRL-KPDRLFLKTADYIMQLRSQVHVLQALSKIY
        ES+   + + Q + + G   G GSIQIKMRKL+ LIPGGRRL +PD L  KTADYIM L  ++  L+A+S IY
Subjt:  ESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRL-KPDRLFLKTADYIMQLRSQVHVLQALSKIY

AT1G70270.1 unknown protein1.8e-0646.55Show/hide
Query:  HGGGS----IQIKMRKLQRLIPGGRRLK-PDRLFLKTADYIMQLRSQVHVLQALSKIY
        HG GS    +Q+K+R+LQ LIPGG+    PD L  KT DYI+ L+ ++  L+A+S++Y
Subjt:  HGGGS----IQIKMRKLQRLIPGGRRLK-PDRLFLKTADYIMQLRSQVHVLQALSKIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATATTATAATAATTGTGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCTCAATCCAAATCAAGATGAG
AAAGCTGCAGCGGCTTATCCCCGGAGGGCGGAGGCTGAAACCGGACCGGCTATTCTTGAAAACCGCTGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAG
CACTTTCCAAGATTTATGATCCTAGGCTTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATATTATAATAATTGTGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCTCAATCCAAATCAAGATGAG
AAAGCTGCAGCGGCTTATCCCCGGAGGGCGGAGGCTGAAACCGGACCGGCTATTCTTGAAAACCGCTGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAG
CACTTTCCAAGATTTATGATCCTAGGCTTTCTTAA
Protein sequenceShow/hide protein sequence
MEYYNNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS