CuGenDBv2

Gene ID	Lsi04G005530
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	hybrid signal transduction histidine kinase L
Genome location	chr04:5057433..5057993
RNA-Seq Expression	Lsi04G005530
Synteny	Lsi04G005530
Gene Ontology terms	GO:0016310 - phosphorylation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0016301 - kinase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8648720.1 hypothetical protein Csa_008998 [Cucumis sativus]

3.1e-74

86.08

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Query:  MSEL------QQQQQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPK
        MSEL      QQQQQ QQQQQPA+VYPDTAAT AGSQ PP HHSNGSFGAVFIVL+VIVVISALACFLGRLCNRRVEN QRPKPEKSH GARP RGKEPK
Subjt:  MSEL------QQQQQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPK

Query:  LHPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH
        LHPDKEGDIEFGFDLRNP+GKGKFP GGN GS G GNG   G GNG +GP GLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH
Subjt:  LHPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH

KAG6601504.1 hypothetical protein SDJN03_06737, partial [Cucurbita argyrosperma subsp. sororia]

3.3e-63

75.53

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Query:  MSELQQQQQPQQQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVENQRPKPEKSHGGARPRGKEPKLHPDKEGDI
        MS+LQQQQ  QQQQQPA VYP+TAA  GSQPPPSHHSNGSFGAVFIVL+VI+VIS +ACFLGRLCNRR ENQR KPEK+HGGARPRGKEPKLHPDKEGDI
Subjt:  MSELQQQQQPQQQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVENQRPKPEKSHGGARPRGKEPKLHPDKEGDI

Query:  EFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTD--HHEGDFNFKAAGHHV
        EFG DLRNPNGKGK P GGNGG+KG G           HGPNG NGPNGH + FKPFENG     +IKH D  HHEGDF FKAA H V
Subjt:  EFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTD--HHEGDFNFKAAGHHV

XP_008446202.1 PREDICTED: hybrid signal transduction histidine kinase L [Cucumis melo]

1.7e-75

86.01

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Query:  MSELQQ-----QQQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKL
        MSELQQ     QQQ QQQQQPA+VYPDTAAT AGSQ PPSHHSNGSFGAVFIVL+VIVVISALACFLGRLCNRRVEN QRPKPEKSH GARP RGKEPKL
Subjt:  MSELQQ-----QQQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKL

Query:  HPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH
        HPDKEGDIEFGFDLRNP+GKGKFPPGGNG   G G   G GNGN   GP GLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKA GHH
Subjt:  HPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH

XP_011655621.2 la-related protein Larp4B [Cucumis sativus]

3.1e-74

86.08

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Query:  MSEL------QQQQQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPK
        MSEL      QQQQQ QQQQQPA+VYPDTAAT AGSQ PP HHSNGSFGAVFIVL+VIVVISALACFLGRLCNRRVEN QRPKPEKSH GARP RGKEPK
Subjt:  MSEL------QQQQQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPK

Query:  LHPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH
        LHPDKEGDIEFGFDLRNP+GKGKFP GGN GS G GNG   G GNG +GP GLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH
Subjt:  LHPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH

XP_038892720.1 uncharacterized protein LOC120081701 [Benincasa hispida]

1.2e-76

86.53

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Query:  MSELQQQQ----QPQQQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARPRGKEPKLHPD
        MSELQQQQ    Q QQQQQPAFVYP+TAAT GSQPPPSHHSNGSFGAVFIVL+VIVVISALACFLGRLCNRRVEN QRPKPEK+H GARPRGKEPKLHPD
Subjt:  MSELQQQQ----QPQQQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARPRGKEPKLHPD

Query:  KEGDIEFGFDLRNPNG-KGKFP-PGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHHV
        KEGDIEFGFDLRNPNG KGKFP  GGNGGSKGK NGNGNG           NGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHHV
Subjt:  KEGDIEFGFDLRNPNG-KGKFP-PGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHHV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTP5 Uncharacterized protein

1.5e-74

87.37

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Query:  MSELQQQ--QQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKLHPD
        MSELQQQ  Q+ QQQQQPA+VYPDTAAT AGSQ PP HHSNGSFGAVFIVL+VIVVISALACFLGRLCNRRVEN QRPKPEKSH GARP RGKEPKLHPD
Subjt:  MSELQQQ--QQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKLHPD

Query:  KEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH
        KEGDIEFGFDLRNP+GKGKFP GGN GS G GNG   G GNG +GP GLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH
Subjt:  KEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH

A0A1S3BF63 hybrid signal transduction histidine kinase L

8.1e-76

86.01

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Query:  MSELQQ-----QQQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKL
        MSELQQ     QQQ QQQQQPA+VYPDTAAT AGSQ PPSHHSNGSFGAVFIVL+VIVVISALACFLGRLCNRRVEN QRPKPEKSH GARP RGKEPKL
Subjt:  MSELQQ-----QQQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKL

Query:  HPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH
        HPDKEGDIEFGFDLRNP+GKGKFPPGGNG   G G   G GNGN   GP GLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKA GHH
Subjt:  HPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH

A0A5A7ST81 Hybrid signal transduction histidine kinase L

8.1e-76

86.01

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Query:  MSELQQ-----QQQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKL
        MSELQQ     QQQ QQQQQPA+VYPDTAAT AGSQ PPSHHSNGSFGAVFIVL+VIVVISALACFLGRLCNRRVEN QRPKPEKSH GARP RGKEPKL
Subjt:  MSELQQ-----QQQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKL

Query:  HPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH
        HPDKEGDIEFGFDLRNP+GKGKFPPGGNG   G G   G GNGN   GP GLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKA GHH
Subjt:  HPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH

A0A6J1GWS9 uncharacterized protein LOC111458233

1.7e-62

73.94

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Query:  MSELQQQQQPQQQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVENQRPKPEKSHGGARPRGKEPKLHPDKEGDI
        MS+LQ     QQQQQPA VYP+TAA  GSQPPPSHHSNGSFGAVFIVL+VI+VIS +AC LGRLCNRR ENQR KPEK+HGGARPRGKEPKLHPDKEGDI
Subjt:  MSELQQQQQPQQQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVENQRPKPEKSHGGARPRGKEPKLHPDKEGDI

Query:  EFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHT--DHHEGDFNFKAAGHHV
        EFG DLRNPNGKGK P GGNGG+KG G           HGP   NGPNGH + FKPFENGGE R +IKH   DHHEGDF FKAA H V
Subjt:  EFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHT--DHHEGDFNFKAAGHHV

E5GBJ1 Uncharacterized protein

8.1e-76

86.01

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Query:  MSELQQ-----QQQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKL
        MSELQQ     QQQ QQQQQPA+VYPDTAAT AGSQ PPSHHSNGSFGAVFIVL+VIVVISALACFLGRLCNRRVEN QRPKPEKSH GARP RGKEPKL
Subjt:  MSELQQ-----QQQPQQQQQPAFVYPDTAAT-AGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVEN-QRPKPEKSHGGARP-RGKEPKL

Query:  HPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH
        HPDKEGDIEFGFDLRNP+GKGKFPPGGNG   G G   G GNGN   GP GLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKA GHH
Subjt:  HPDKEGDIEFGFDLRNPNGKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G23530.1 unknown protein

2.9e-09

36.96

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Query:  QQPQQQQQPAFVYPDT----AATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNR------RVENQRPKPEKSHGGARPRGKEPKLHPDKE
        Q  QQ QQP  VYP+          ++P  S  S+G+FG VFIVL+VI V+SALAC  GRLCNR      +  ++ PK EK+        +  +  P + 
Subjt:  QQPQQQQQPAFVYPDT----AATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNR------RVENQRPKPEKSHGGARPRGKEPKLHPDKE

Query:  GDIEFGFDLRNPNGKGKFPPGGNGG--------SKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHH
        GD++FGFD++ P    K P G +GG        +K    G   G G GP  PN       H   FK  ENG          DHH
Subjt:  GDIEFGFDLRNPNGKGKFPPGGNGG--------SKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHH

AT1G70470.1 unknown protein

8.1e-12

42.28

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Query:  QPQQQQQPAFVYPDT-AATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNR-------RVENQRPKPEKSHGGARPRGKEPKLHPDKEGDI
        QPQ+ QQP  VYP T ++T+ S  P S  S+GSFG  FIVL+ I+V++ALAC  GRLCNR       +  N+  K EK         +  +  P + GD+
Subjt:  QPQQQQQPAFVYPDT-AATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNR-------RVENQRPKPEKSHGGARPRGKEPKLHPDKEGDI

Query:  EFGFDLRNPNGKGKFPPGGNGG--SKGKGNGNGNGNGNGPHGPNGLNGP
        EFGFD++ P    K P G NGG    G  N  G G G G  G  G   P
Subjt:  EFGFDLRNPNGKGKFPPGGNGG--SKGKGNGNGNGNGNGPHGPNGLNGP

AT1G74055.1 unknown protein

5.6e-05

41.27

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Query:  QQQPQQQQQPAFVYP--DTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNR
        QQQPQQQ     + P    A    +   P+H+S+ S G  F V+SV+++++ L+CFLGR C R
Subjt:  QQQPQQQQQPAFVYP--DTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNR

Sequences

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CDS sequence

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ATGTCGGAACTTCAACAACAACAGCAACCGCAACAGCAACAGCAGCCGGCTTTTGTTTATCCCGACACGGCGGCGACGGCTGGTAGCCAACCTCCGCCTTCCCATCATTC
CAACGGCTCATTTGGGGCAGTTTTTATAGTTCTTTCGGTTATTGTTGTTATATCGGCTCTTGCTTGTTTCCTTGGGCGTCTCTGCAACCGGCGAGTTGAAAACCAGAGGC
CGAAGCCGGAGAAAAGCCACGGCGGCGCTCGTCCTAGAGGAAAAGAACCCAAATTGCATCCTGATAAAGAAGGAGATATTGAATTTGGATTTGATTTGAGAAACCCAAAT
GGGAAAGGCAAATTCCCACCTGGTGGAAATGGAGGAAGCAAAGGCAAAGGCAATGGCAATGGCAATGGTAATGGTAATGGGCCTCATGGACCTAATGGGCTTAATGGGCC
TAATGGCCATGGAAATAGCTTCAAACCCTTTGAAAATGGCGGTGAAACGAGAAGCGAAATTAAACATACAGATCATCATGAAGGAGATTTCAATTTCAAAGCTGCAGGGC
ATCATGTTTGA

mRNA sequence

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Protein sequence

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MSELQQQQQPQQQQQPAFVYPDTAATAGSQPPPSHHSNGSFGAVFIVLSVIVVISALACFLGRLCNRRVENQRPKPEKSHGGARPRGKEPKLHPDKEGDIEFGFDLRNPN
GKGKFPPGGNGGSKGKGNGNGNGNGNGPHGPNGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHHV

Lsi04G005530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome