CuGenDBv2

Gene ID	Lsi04G005870
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ABC transporter B family member 26
Genome location	chr04:5382952..5383440
RNA-Seq Expression	Lsi04G005870
Synteny	Lsi04G005870
Gene Ontology terms	GO:0055085 - transmembrane transport (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0034276.1 ABC transporter B family member 26 [Cucumis melo var. makuwa]

8.8e-73

90.85

Show/hide

Query:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP
        MSSFICNIQVP PNLLLSRQLHVDKIRS+GL FT++K LRWNH S +CRFLLPP KSAINGYGISVPSSSEEREE HGEAEFDIVDKL GLLG+LRSILP
Subjt:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP

Query:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS
        GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAA+S
Subjt:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS

KAG6573712.1 ABC transporter B family member 26, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

5.5e-67

82.35

Show/hide

Query:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP
        MS+FICN+QVPRP+L L R+ H  +IRSRG PF N K+LR NHFSINCRFLLPPPKSAINGYGISVPSSSEERE GHGE EFDI+ KL GL+GNLRSILP
Subjt:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP

Query:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS
        GGSWWSLSDE EVR+SVEPVTVTRALG+MWDLVARDRWII++AFSVLVIAA+S
Subjt:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS

XP_004135488.1 ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis sativus]

3.4e-72

90.2

Show/hide

Query:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP
        MSSFICNIQVP PNLLL RQLHVDKIRSRGL FT++K+LRWNH SI+CRFLLPP KSAINGYGISVPSSSEEREE  GEAEFDIVDKL GLLG+LRSILP
Subjt:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP

Query:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS
        GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLV+RDRWIIYSAFSVLVIAA+S
Subjt:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS

XP_008446165.1 PREDICTED: ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis melo]

8.8e-73

90.85

Show/hide

Query:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP
        MSSFICNIQVP PNLLLSRQLHVDKIRS+GL FT++K LRWNH S +CRFLLPP KSAINGYGISVPSSSEEREE HGEAEFDIVDKL GLLG+LRSILP
Subjt:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP

Query:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS
        GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAA+S
Subjt:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS

XP_038893200.1 ABC transporter B family member 26, chloroplastic [Benincasa hispida]

7.7e-77

94.12

Show/hide

Query:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP
        MSSFICN QVPRPNLLLSRQLHVDKIRSRG PFTN+KVLRW+HFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKL  LLG+LRSILP
Subjt:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP

Query:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS
        GGSWWSLSDEAEVRISV+PVTVTRALGRMWDLVARDRWIIYSAFSVLVIAA+S
Subjt:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KVH9 Uncharacterized protein

1.6e-72

90.2

Show/hide

Query:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP
        MSSFICNIQVP PNLLL RQLHVDKIRSRGL FT++K+LRWNH SI+CRFLLPP KSAINGYGISVPSSSEEREE  GEAEFDIVDKL GLLG+LRSILP
Subjt:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP

Query:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS
        GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLV+RDRWIIYSAFSVLVIAA+S
Subjt:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS

A0A1S3BDX4 ABC transporter B family member 26, chloroplastic isoform X1

4.3e-73

90.85

Show/hide

Query:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP
        MSSFICNIQVP PNLLLSRQLHVDKIRS+GL FT++K LRWNH S +CRFLLPP KSAINGYGISVPSSSEEREE HGEAEFDIVDKL GLLG+LRSILP
Subjt:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP

Query:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS
        GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAA+S
Subjt:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS

A0A5A7SWM5 ABC transporter B family member 26

4.3e-73

90.85

Show/hide

Query:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP
        MSSFICNIQVP PNLLLSRQLHVDKIRS+GL FT++K LRWNH S +CRFLLPP KSAINGYGISVPSSSEEREE HGEAEFDIVDKL GLLG+LRSILP
Subjt:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP

Query:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS
        GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAA+S
Subjt:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS

A0A6J1G219 ABC transporter B family member 26, chloroplastic isoform X1

1.3e-66

82.35

Show/hide

Query:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP
        MS+FICN+QVPRP+L L R+    +IRSRG PF N K+LR NHFSINCRFLLPPPKSAINGYGISVPSSSEERE GHGE EFDI+ KL GL+GNLRSILP
Subjt:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP

Query:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS
        GGSWWSLSDE EVRISVEPVTVTRALG+MWDLVARDRWII++AFSVLVIAA+S
Subjt:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS

A0A6J1HT83 ABC transporter B family member 26, chloroplastic isoform X1

5.6e-65

80.39

Show/hide

Query:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP
        MS+FICN+QVPRP+L L R+ H  +IRSRG PF N K+LR N+FSINCRFLLPPPKSAINGYGISVPSSSEERE GH E EFDI+ KL GL+G++RSILP
Subjt:  MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILP

Query:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS
        GGSWWSLSDE EVRISVEPVTVTRALG+MWDLVARDRWII++AFSVLVIAA+S
Subjt:  GGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS

SwissProt top hits

e value

%identity

Alignment

Q8RY46 ABC transporter B family member 26, chloroplastic

3.7e-21

42.75

Show/hide

Query:  DKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPK-SAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPVTV
        D IR + L F  +  L ++  S    + LP    S +NG      + + E  EG G+    + +K+   +  LR+ILPGGSWWS SDE + R   +PVTV
Subjt:  DKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPK-SAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPVTV

Query:  TRALGRMWDLVARDRWIIYSAFSVLVIAAVS
         RAL RMW+LVA DRW+I++AFS L++AA+S
Subjt:  TRALGRMWDLVARDRWIIYSAFSVLVIAAVS

Arabidopsis top hits

e value

%identity

Alignment

AT1G70610.1 transporter associated with antigen processing protein 1

2.6e-22

42.75

Show/hide

Query:  DKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPK-SAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPVTV
        D IR + L F  +  L ++  S    + LP    S +NG      + + E  EG G+    + +K+   +  LR+ILPGGSWWS SDE + R   +PVTV
Subjt:  DKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPK-SAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPVTV

Query:  TRALGRMWDLVARDRWIIYSAFSVLVIAAVS
         RAL RMW+LVA DRW+I++AFS L++AA+S
Subjt:  TRALGRMWDLVARDRWIIYSAFSVLVIAAVS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTTCGTTCATTTGCAATATACAAGTTCCTCGTCCCAATCTTTTGCTTTCTCGCCAGCTTCATGTCGATAAAATTCGCTCTCGAGGACTTCCTTTCACCAACGATAA
GGTTCTGCGGTGGAATCATTTCTCAATCAATTGTCGATTCCTCTTACCTCCTCCGAAGTCAGCCATTAACGGATATGGAATCTCGGTCCCGAGTTCTTCGGAAGAGCGAG
AAGAAGGCCATGGCGAAGCTGAGTTTGATATTGTAGATAAGCTTTGGGGATTGCTTGGCAATCTACGTTCGATTTTGCCTGGTGGGAGCTGGTGGAGCTTATCCGATGAA
GCTGAAGTCAGAATTTCGGTTGAGCCAGTGACTGTGACGCGGGCTCTTGGCAGGATGTGGGACCTGGTTGCTAGAGACCGTTGGATCATCTACTCCGCATTTTCTGTTTT
GGTTATTGCGGCGGTCTCTCTCTCTCTCTCTCCCTCTCTCCCGCTCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDE
AEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVSLSLSPSLPL

Lsi04G005870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome