; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G005990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G005990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr04:5535584..5536699
RNA-Seq ExpressionLsi04G005990
SyntenyLsi04G005990
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR044249 - Probable E3 ubiquitin-protein ligase XERICO-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034267.1 putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa]2.9e-4592.45Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRF
        MGLSNFPPSAEGVLLLPVLVM+TVMSMAFLKN VRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFK+LGQSFNG TE +  SRCVMAECCVCLCRF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRF

Query:  EADEEV
        EADEEV
Subjt:  EADEEV

KAG6601543.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4494.39Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSF-NGGTENDSASRCVMAECCVCLCR
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGN SSSEEE DWENGRERRISITQFKSLGQSF NGGTE  SASRCVMAECCVCLC 
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSF-NGGTENDSASRCVMAECCVCLCR

Query:  FEADEEV
        FEADEEV
Subjt:  FEADEEV

XP_011655602.1 probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus]6.5e-4592.45Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGNSSSSEEEYDWEN RERRISITQFK+LGQSFNG TE +  SRCVMAECCVCLCRF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRF

Query:  EADEEV
        EADEEV
Subjt:  EADEEV

XP_022984317.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]5.0e-4593.46Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSF-NGGTENDSASRCVMAECCVCLCR
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGN SSSEEE+DWENGRERRISITQFKSLGQSF NGGTE  SASRC+MAECCVCLC 
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSF-NGGTENDSASRCVMAECCVCLCR

Query:  FEADEEV
        FEADEEV
Subjt:  FEADEEV

XP_038892017.1 probable E3 ubiquitin-protein ligase XERICO [Benincasa hispida]8.5e-4594.34Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN+SSSEEEYDWENGRERRISITQFKSLGQSFNG TE DS SRCVMAECCVCLC F
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRF

Query:  EADEEV
        EADEEV
Subjt:  EADEEV

TrEMBL top hitse value%identityAlignment
A0A0A0KTI8 RING-type domain-containing protein3.2e-4592.45Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGNSSSSEEEYDWEN RERRISITQFK+LGQSFNG TE +  SRCVMAECCVCLCRF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRF

Query:  EADEEV
        EADEEV
Subjt:  EADEEV

A0A5A7SYA9 Putative E3 ubiquitin-protein ligase XERICO1.4e-4592.45Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRF
        MGLSNFPPSAEGVLLLPVLVM+TVMSMAFLKN VRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFK+LGQSFNG TE +  SRCVMAECCVCLCRF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRF

Query:  EADEEV
        EADEEV
Subjt:  EADEEV

A0A6J1DFU2 probable E3 ubiquitin-protein ligase XERICO5.2e-4086.11Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNS--SSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLC
        MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+LVRSVIQMMSASG++  SSSEEEYD EN RERRISITQFKSL QSFNGGTE+ SASRC+ AECCVCLC
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNS--SSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLC

Query:  RFEADEEV
         FEADEEV
Subjt:  RFEADEEV

A0A6J1GZI7 probable E3 ubiquitin-protein ligase XERICO5.4e-4594.39Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSF-NGGTENDSASRCVMAECCVCLCR
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGN SSSEEE DWENGRERRISITQFKSLGQSF NGGTE  SASRCVMAECCVCLC 
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSF-NGGTENDSASRCVMAECCVCLCR

Query:  FEADEEV
        FEADEEV
Subjt:  FEADEEV

A0A6J1J1V9 probable E3 ubiquitin-protein ligase XERICO2.4e-4593.46Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSF-NGGTENDSASRCVMAECCVCLCR
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGN SSSEEE+DWENGRERRISITQFKSLGQSF NGGTE  SASRC+MAECCVCLC 
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSF-NGGTENDSASRCVMAECCVCLCR

Query:  FEADEEV
        FEADEEV
Subjt:  FEADEEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G24580.1 RING/U-box superfamily protein1.1e-1044.19Show/hide
Query:  MNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEV
        MNTV+S+  LKN+VRSV Q++++   SS   ++   ++   RRISITQFKSL ++     E          ECCVCLC F+ +EEV
Subjt:  MNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEV

AT1G67856.1 RING/U-box superfamily protein8.0e-1746.3Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSS-SSEEEYDWENG-RERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLC
        MG+S++P ++EGV  +P+LVMNTV+S++ +KN+VRSV+ M+S+  N + + E++ D E+  R RRISIT F+SL +  N G+ N+  +     +CCVCLC
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSS-SSEEEYDWENG-RERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLC

Query:  RFEADEEV
         F+ +EEV
Subjt:  RFEADEEV

AT2G04240.1 RING/U-box superfamily protein1.2e-0431.67Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSAS---GNSSSSEEEYDWENGRERR---ISITQFKSLGQSFNGGTEN---DSASRCVMA
        MGLS+ P  +EG+L   V+++NT +S++ +K +VRS + ++  S    +SS S      EN          + Q +S  + F   T     +S  RC   
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSAS---GNSSSSEEEYDWENGRERR---ISITQFKSLGQSFNGGTEN---DSASRCVMA

Query:  ---ECCVCLCRFEADEEVMK
           EC VCL +F+ D E+ K
Subjt:  ---ECCVCLCRFEADEEVMK

AT2G04240.2 RING/U-box superfamily protein1.2e-0431.67Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSAS---GNSSSSEEEYDWENGRERR---ISITQFKSLGQSFNGGTEN---DSASRCVMA
        MGLS+ P  +EG+L   V+++NT +S++ +K +VRS + ++  S    +SS S      EN          + Q +S  + F   T     +S  RC   
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSAS---GNSSSSEEEYDWENGRERR---ISITQFKSLGQSFNGGTEN---DSASRCVMA

Query:  ---ECCVCLCRFEADEEVMK
           EC VCL +F+ D E+ K
Subjt:  ---ECCVCLCRFEADEEVMK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTCTCAAATTTTCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTCTTGAAGAATTTGGTGAGATCTGT
GATACAAATGATGAGTGCGAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACTCAGTTCAAATCTTTGGGGC
AAAGCTTTAATGGTGGAACAGAGAATGACTCTGCTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTGTGTAGGTTTGAAGCTGATGAAGAAGTTATGAAAAATCTG
GTTCAGAACTCATTCATGACACAAGAAATGCTGTGTGCTGGCCAAATTGATGACCAGAAGTTCAGCTATGGGGCACAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCTCTCAAATTTTCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTCTTGAAGAATTTGGTGAGATCTGT
GATACAAATGATGAGTGCGAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACTCAGTTCAAATCTTTGGGGC
AAAGCTTTAATGGTGGAACAGAGAATGACTCTGCTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTGTGTAGGTTTGAAGCTGATGAAGAAGTTATGAAAAATCTG
GTTCAGAACTCATTCATGACACAAGAAATGCTGTGTGCTGGCCAAATTGATGACCAGAAGTTCAGCTATGGGGCACAATAA
Protein sequenceShow/hide protein sequence
MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEVMKNL
VQNSFMTQEMLCAGQIDDQKFSYGAQ