CuGenDBv2

Gene ID	Lsi04G006360
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	photosystem II core complex proteins psbY, chloroplastic-like
Genome location	chr04:5839449..5839973
RNA-Seq Expression	Lsi04G006360
Synteny	Lsi04G006360
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KGN52335.2 hypothetical protein Csa_009403 [Cucumis sativus]

6.6e-74

91.67

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Query:  MAATMATM----AKCFTP-NKTPLLPSKP-TRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATM    AKCFTP NKTPLLPSKP T+PISLP LPI TK SLAGTAIAGAIFSTLSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATM----AKCFTP-NKTPLLPSKP-TRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGL+ASGLVGTPEAMAAEA SDGRGQLLLIVVAPAIAWVL+NILQPALNQLNRMRS+
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE

XP_004135291.1 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]

2.9e-74

92.22

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Query:  MAATMATM----AKCFTP-NKTPLLPSKP-TRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATM    AKCFTP NKTPLLPSKP T+PISLP LPI TK SLAGTAIAGAIFSTLSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATM----AKCFTP-NKTPLLPSKP-TRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGL+ASGLVGTPEAMAAEA SDGRGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE

XP_008446112.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo]

1.6e-75

92.78

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Query:  MAATMATM----AKCFTP-NKTP-LLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATM    AKCFTP NKTP LLPSKPT+PISLP  PIPTK SLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATM----AKCFTP-NKTP-LLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGL+ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE

XP_022998705.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]

1.8e-71

88.89

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Query:  MAATMATM----AKCFTPNKT--PLLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATM    AKCFTPN+T  PLLPSKPTRPISLP +P P KSSLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATM----AKCFTPNKT--PLLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVI GLGLGGL+ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE

XP_038891337.1 photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

7.2e-81

94.94

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Query:  MAATMATM----AKCFTPNKTPLLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATM    AKCFTPNKTPLLPSKPTRPISLP+LP PTK SLAGTAIAGAIFST SSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATM----AKCFTPNKTPLLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIVGLGLGGL+ASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTG2 Uncharacterized protein

1.4e-74

92.22

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Query:  MAATMATM----AKCFTP-NKTPLLPSKP-TRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATM    AKCFTP NKTPLLPSKP T+PISLP LPI TK SLAGTAIAGAIFSTLSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATM----AKCFTP-NKTPLLPSKP-TRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGL+ASGLVGTPEAMAAEA SDGRGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE

A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like

7.6e-76

92.78

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Query:  MAATMATM----AKCFTP-NKTP-LLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATM    AKCFTP NKTP LLPSKPT+PISLP  PIPTK SLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATM----AKCFTP-NKTP-LLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGL+ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE

A0A5A7SY80 Photosystem II core complex proteins psbY

7.6e-76

92.78

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Query:  MAATMATM----AKCFTP-NKTP-LLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATM    AKCFTP NKTP LLPSKPT+PISLP  PIPTK SLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATM----AKCFTP-NKTP-LLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGL+ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE

A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like

4.3e-71

88.33

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Query:  MAATMATM----AKCFTPNKT--PLLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATM    AKCFTPN+T  PLLPSKPT PISLP +P P KSSLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATM----AKCFTPNKT--PLLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVI GLGLGGL+ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE

A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like

8.6e-72

88.89

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Query:  MAATMATM----AKCFTPNKT--PLLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATM    AKCFTPN+T  PLLPSKPTRPISLP +P P KSSLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATM----AKCFTPNKT--PLLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVI GLGLGGL+ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

3.9e-45

59.36

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Query:  MAATMATMAKCFTPNKTP--LLPSKPTRP-ISLPNLPIPTKS-SLAGTAIAGAIFSTLSSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLF
        MAA MAT  KC + N +P  L     ++P ISLP  P P  S ++  TA+AGA+FS+LS  + A A QQIA L    A  DNRGLALLLP++PA+AWVL+
Subjt:  MAATMATMAKCFTPNKTP--LLPSKPTRP-ISLPNLPIPTKS-SLAGTAIAGAIFSTLSSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLF

Query:  NILQPALNQINRMRTEKAVIVGLGL-GGLVASGLVGTP-----EAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRS
        NILQPA+NQ+N+MR  K ++VGLG+ GGL ASGL+  P      A AA ASSD RGQLLLIVV PA+ WVLYNILQPALNQ+N+MRS
Subjt:  NILQPALNQINRMRTEKAVIVGLGL-GGLVASGLVGTP-----EAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

3.3e-44

59.8

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Query:  MAATMATM-----AKCFT--PNKTPLLPSKPT-RPISL-------PNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLA----EGDNRGLALLL
        MAATMAT       KC T   NKT     KPT +PISL         LP+     +   AIAGA+F+TL S D AFA QQ+AD+A      DNRGLALLL
Subjt:  MAATMATM-----AKCFT--PNKTPLLPSKPT-RPISL-------PNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLA----EGDNRGLALLL

Query:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIVGLGLGGLVASG-LVGTPEAMAAE----ASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        P+IPA+ WVLFNILQPALNQIN+MR E KA IVGLGL GL  SG L+ TPEA AA       SD RG LLL+VV PAI WVL+NILQPALNQLN+MRS+
Subjt:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIVGLGLGGLVASG-LVGTPEAMAAE----ASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

2.8e-46

59.36

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Query:  MAATMATMAKCFTPNKTP--LLPSKPTRP-ISLPNLPIPTKS-SLAGTAIAGAIFSTLSSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLF
        MAA MAT  KC + N +P  L     ++P ISLP  P P  S ++  TA+AGA+FS+LS  + A A QQIA L    A  DNRGLALLLP++PA+AWVL+
Subjt:  MAATMATMAKCFTPNKTP--LLPSKPTRP-ISLPNLPIPTKS-SLAGTAIAGAIFSTLSSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLF

Query:  NILQPALNQINRMRTEKAVIVGLGL-GGLVASGLVGTP-----EAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRS
        NILQPA+NQ+N+MR  K ++VGLG+ GGL ASGL+  P      A AA ASSD RGQLLLIVV PA+ WVLYNILQPALNQ+N+MRS
Subjt:  NILQPALNQINRMRTEKAVIVGLGL-GGLVASGLVGTP-----EAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRS

Sequences

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CDS sequence

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ATGGCGGCAACAATGGCAACCATGGCCAAATGCTTCACCCCCAACAAAACCCCACTCCTCCCTTCAAAGCCCACTAGACCCATCTCCCTTCCCAACCTCCCAATCCCAAC
CAAATCTTCCCTCGCCGGTACCGCCATCGCCGGAGCTATCTTCTCAACACTCAGCTCCGGAGACGCCGCCTTCGCTGCCCAACAAATTGCCGATCTAGCGGAGGGCGACA
ACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCCGCGGTGGCTTGGGTTCTGTTCAACATTCTTCAGCCGGCGCTGAATCAGATTAATCGGATGCGTACGGAGAAGGCG
GTGATTGTAGGGTTAGGTCTTGGTGGGCTGGTGGCGTCGGGACTGGTGGGGACGCCGGAGGCAATGGCGGCGGAGGCTTCGAGTGATGGACGGGGACAGTTGCTGTTGAT
TGTGGTGGCGCCGGCGATTGCGTGGGTTCTGTACAATATTCTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGA

mRNA sequence

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Protein sequence

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MAATMATMAKCFTPNKTPLLPSKPTRPISLPNLPIPTKSSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKA
VIVGLGLGGLVASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE

Lsi04G006360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome