; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G006410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G006410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr04:5887730..5890457
RNA-Seq ExpressionLsi04G006410
SyntenyLsi04G006410
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0004386 - helicase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135295.1 E3 ubiquitin-protein ligase AIRP2 [Cucumis sativus]5.0e-3094.2Show/hide
Query:  NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI
        NTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKEDML+FHRYINSLPKDYPDALF+VYSEYLI
Subjt:  NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI

XP_022151983.1 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Momordica charantia]2.9e-3084.52Show/hide
Query:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI
        A  +KC     YR  NTRS SCPFCRGSLKRVNSEDLWVLTC+DDVVDAET SKEDMLRFHRYINSLPKDYPDALFVVYSEYLI
Subjt:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI

XP_022967134.1 RING-H2 finger protein ATL47 [Cucurbita maxima]5.0e-3085.54Show/hide
Query:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYL
        A  +KC     YR  NTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKED LRFHRYINSLPKDYPDALFVVYSEYL
Subjt:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYL

XP_023542538.1 RING-H2 finger protein ATL47-like [Cucurbita pepo subsp. pepo]5.0e-3085.54Show/hide
Query:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYL
        A  +KC     YR  NTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKED LRFHRYINSLPKDYPDALFVVYSEYL
Subjt:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYL

XP_038893224.1 E3 ubiquitin-protein ligase AIRP2-like [Benincasa hispida]1.0e-3097.1Show/hide
Query:  NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI
        NTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVDAET+SKEDMLRFHRYINSLPKDYPDALFVVYSEYLI
Subjt:  NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI

TrEMBL top hitse value%identityAlignment
A0A0A0KPZ5 RING-type domain-containing protein2.4e-3094.2Show/hide
Query:  NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI
        NTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKEDML+FHRYINSLPKDYPDALF+VYSEYLI
Subjt:  NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI

A0A5D3CUV6 E3 ubiquitin-protein ligase RNF8-B2.4e-3094.2Show/hide
Query:  NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI
        NTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKEDML+FHRYINSLPKDYPDALF+VYSEYLI
Subjt:  NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI

A0A6J1DEP0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 11.4e-3084.52Show/hide
Query:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI
        A  +KC     YR  NTRS SCPFCRGSLKRVNSEDLWVLTC+DDVVDAET SKEDMLRFHRYINSLPKDYPDALFVVYSEYLI
Subjt:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI

A0A6J1G051 RING-H2 finger protein ATL47-like2.4e-3085.54Show/hide
Query:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYL
        A  +KC     YR  NTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKED LRFHRYINSLPKDYPDALFVVYSEYL
Subjt:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYL

A0A6J1HVW5 RING-H2 finger protein ATL472.4e-3085.54Show/hide
Query:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYL
        A  +KC     YR  NTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKED LRFHRYINSLPKDYPDALFVVYSEYL
Subjt:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYL

SwissProt top hitse value%identityAlignment
Q9M022 E3 ubiquitin-protein ligase AIRP22.9e-1252.17Show/hide
Query:  YRN--TRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYS
        YRN   RS SCPFCRGSLKRVNS DLW+ TCS ++ D   + KE++ R   YI+ LP    D   V Y+
Subjt:  YRN--TRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYS

Arabidopsis top hitse value%identityAlignment
AT1G13195.1 RING/U-box superfamily protein1.2e-2473.13Show/hide
Query:  NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEY
        N +S SCPFCRGS+KRVNSEDLWVL   +DVVD  T S+ED+ RF+ YINSLPKDYP+ALFVVY EY
Subjt:  NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEY

AT1G13195.2 RING/U-box superfamily protein1.2e-2473.13Show/hide
Query:  NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEY
        N +S SCPFCRGS+KRVNSEDLWVL   +DVVD  T S+ED+ RF+ YINSLPKDYP+ALFVVY EY
Subjt:  NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEY

AT1G24440.1 RING/U-box superfamily protein1.7e-2870.24Show/hide
Query:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI
        A  +KC     YR  NT+S SCPFCRGS+KRVNSEDLWVLTC +DVVD ETV+KED+LRF+ +INSLPKDYP+A F+VY+EYLI
Subjt:  ASVLKCSFFLHYR--NTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI

AT3G47160.1 RING/U-box superfamily protein3.3e-1152.54Show/hide
Query:  RSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALF
        RS SCPFCR SLKRVNS DLW+L    D V+  T+ +E+  R   YI  LP   PD +F
Subjt:  RSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALF

AT5G01520.1 RING/U-box superfamily protein2.0e-1352.17Show/hide
Query:  YRN--TRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYS
        YRN   RS SCPFCRGSLKRVNS DLW+ TCS ++ D   + KE++ R   YI+ LP    D   V Y+
Subjt:  YRN--TRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTACTTTGAAGTGGCCTCTGTGCTCAAGTGCTCTTTCTTCCTACATTACAGGAATACAAGGTCAGCGTCCTGTCCATTTTGTCGTGGCAGCTTAAAGAGAGTCAA
CTCAGAGGACTTATGGGTGCTCACCTGTAGCGATGATGTGGTTGATGCCGAAACTGTTTCCAAGGAGGACATGTTGCGCTTTCATCGCTATATAAACAGCCTTCCAAAAG
ACTATCCAGATGCCCTTTTCGTAGTATATTCCGAGTATCTAATTTAG
mRNA sequenceShow/hide mRNA sequence
AGGCAACCAGCTTCACAAGCAATAAAGGAATATATATTGGATGGATAAGAATGAAAATTCAAGCTTTATCAAAAAGAAAAAAGAAAAAAAAAAAAGAAAAAGAAATTGAA
GCCATCCCCCAACCAAACCCATAATGGACTCTACCATTCATCTTCTTCATCATCATCATCATCATCATCATCATCATCATCATCATCATATCTGAGCTGAAACTTGTTCT
TCTTATATGAAAGCTTTTCCTGACCACAGAGGCTGAGTAAAGGTCATTTCACTGCTACCCTCCATTGACTAAAGGACAAAGCGCTTTAAAAGCTAGAGAAGAAAAGGCTT
CTTTTTATTTCGAAAGTAGGTTTGGGGCTTACCTTCTCCATCTTCACTCTCTTCTTTGTTTTGGGATTTTGGGTCATAGGTTTTTAAGCCAGGGTTTCTTCTTTCGCCAT
AGCCCACTAAGAAAACGAGCTTCACGCTCTGGTTTTCTCCTTTTTCTCTCTTGTTTTCATCGGTTTCTTGCAGAAGAGGGAAGGGAATCTTTCAGATTATGTATTATCAG
CTCGAAAAATTCTCTCATCAGGATTCCCTGGAAGTCTTGGAGGCGGATATTCAGTATGCAAATTCTCTGGCGGCTGCAATCCCCATGGCAAAAGGGGGTGCTTATCTTCA
AATGAAGTTGCTATAATATTGCCTTCGCTTCAGCGAATCCACGGTAGCTTGGATAAGTTGGACGATTGCAAGGAAGGGCATCACTGGATTGAGATGTCTAGCAAGAAGAG
AGGTGATAAAGATGGTAGACTTATGAACATCGATATGAAGCGAGAAGATGAGTGTGGTATTTGCTTGGAGCCCTGTACAAAGATGGTTTTGCCGAATTGCTGTCATTCAA
TGTGCATCAAATGCTACCGAAATTGGTAAAAACAAGTCTTATTAAGCATCTTCATTGTCTATGAAGTACTTTGAAGTGGCCTCTGTGCTCAAGTGCTCTTTCTTCCTACA
TTACAGGAATACAAGGTCAGCGTCCTGTCCATTTTGTCGTGGCAGCTTAAAGAGAGTCAACTCAGAGGACTTATGGGTGCTCACCTGTAGCGATGATGTGGTTGATGCCG
AAACTGTTTCCAAGGAGGACATGTTGCGCTTTCATCGCTATATAAACAGCCTTCCAAAAGACTATCCAGATGCCCTTTTCGTAGTATATTCCGAGTATCTAATTTAGTTC
AGACTTCAGAGTAAACTGTATAGAGGGAAAATCCCAACGCGAAATGTAAAGGTCAGAAAATATCCTCTCTGCTTCATATAGAATAATTGATCACATGACATGCTTAGTTA
GAACTAATAATGAATCAATGTAAGATGCTAATCGTCTCCGCATCTCGGCTCGTGTATCTTATAAACTTGAAAGTGCCTTTTCTAGTGCACTACTTGTTGATAAAGATGAA
TTTGGTCTCTTCTGATGGATTATATCTTATGTTTAGTTGGCATGGATGGAATGGTTCTGTTCTGATCTTCGATAATCTAGAATTCACTGTGTAATTTGTGGGGTCTTCTC
TAGAATTTCAACTCTCTGAGCTTATCTTGCGTTATCAATCATAGGACATAAGTTGTTCTGTTTTTTCTTGTGGGGTTCTAATTATATTATCAACAAACTAGCCTATGATC
AATAATCATGGTTGGCGGAAGTACAATAATTTGAAAGAAAGTAATCTGCTGTCTTAAGGAATTGAAAATGATTGAAAATCCACTTTGAAAGCAATGCCCATTGCAGGAAA
CAGACTAAACAGAAAACCGTGGAGATATTTCTCTGCCAAAAGCGTCATCTTAGTGTGATTGAGATTCTGAAATCTAAGGTCTAAAACAAGGAAGAGGAATGGTTAACAGA
TTGACTTGGATTGCAGGAGTTTGAATAGCCTTTTTTTCCTAGTACACATTTGAGTTTTTCATGATGTTAGACTACACATTGAAAAATGATTGCTTGTAATATTTTCAATT
CTGAGAGCTGCACATACGTCG
Protein sequenceShow/hide protein sequence
MKYFEVASVLKCSFFLHYRNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI