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Lsi04G006670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G006670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProteasome subunit beta
Genome locationchr04:6102590..6102880
RNA-Seq ExpressionLsi04G006670
SyntenyLsi04G006670
Gene Ontology termsGO:0010498 - proteasomal protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0019774 - proteasome core complex, beta-subunit complex (cellular component)
GO:0004175 - endopeptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR51310.1 hypothetical protein CICLE_v10032238mg [Citrus clementina]1.6e-0960.29Show/hide
Query:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG
        LKKL +WLEE FIMQHS+   V     FIM DQMDGR+ LVMMLE+FTT II    ++ ++KWLKS G
Subjt:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG

ESR51311.1 hypothetical protein CICLE_v10032238mg [Citrus clementina]1.6e-0960.29Show/hide
Query:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG
        LKKL +WLEE FIMQHS+   V     FIM DQMDGR+ LVMMLE+FTT II    ++ ++KWLKS G
Subjt:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG

KAF3954275.1 hypothetical protein CMV_020359 [Castanea mollissima]2.5e-0757.35Show/hide
Query:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG
        LK L + LE  FIMQHS    V     FIM   +DGR++LVMMLENF TN I L  +Q NRKWLK LG
Subjt:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG

KDO81951.1 hypothetical protein CISIN_1g022125mg [Citrus sinensis]5.4e-1060.29Show/hide
Query:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG
        LKKL +WLEE FIM+HS+   V     FIM DQMDGR+ LVMMLE+FTT II  + +Q ++KWLKS G
Subjt:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG

XP_006484069.1 proteasome subunit beta type-5-B-like isoform X1 [Citrus sinensis]1.6e-0960.29Show/hide
Query:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG
        LKKL +WLEE FIMQHS+   V     FIM DQMDGR+ LVMMLE+FTT II    ++ ++KWLKS G
Subjt:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG

TrEMBL top hitse value%identityAlignment
A0A067H302 Proteasome subunit beta2.6e-1060.29Show/hide
Query:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG
        LKKL +WLEE FIM+HS+   V     FIM DQMDGR+ LVMMLE+FTT II  + +Q ++KWLKS G
Subjt:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG

A0A0V0HS24 Proteasome subunit beta3.3e-0553.12Show/hide
Query:  KKLLNWLEEQFIMQHS-----KTGRVFIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLK
        KK L+WL+E+FIM HS     +   VFIM DQMDGR++ V MLEN TT  I       +RKWLK
Subjt:  KKLLNWLEEQFIMQHS-----KTGRVFIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLK

V4TI71 Proteasome subunit beta7.6e-1060.29Show/hide
Query:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG
        LKKL +WLEE FIMQHS+   V     FIM DQMDGR+ LVMMLE+FTT II    ++ ++KWLKS G
Subjt:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG

V4TNA4 Proteasome subunit beta7.6e-1060.29Show/hide
Query:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG
        LKKL +WLEE FIMQHS+   V     FIM DQMDGR+ LVMMLE+FTT II    ++ ++KWLKS G
Subjt:  LKKLLNWLEEQFIMQHSKTGRV-----FIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGAAGAAGTTGCTGAATTGGCTAGAAGAACAATTTATCATGCAACATTCCAAGACGGGGCGAGTGTTTATTATGTTGGACCAAATGGATGGAAGAAACTATCTGGTGAT
GATGTTGGAGAACTTCACTACAAATATTATCTGGTTGTATCTGATACAGATGAACAGGAAATGGTTGAAGTCGTTGGGT
mRNA sequenceShow/hide mRNA sequence
TTGAAGAAGTTGCTGAATTGGCTAGAAGAACAATTTATCATGCAACATTCCAAGACGGGGCGAGTGTTTATTATGTTGGACCAAATGGATGGAAGAAACTATCTGGTGAT
GATGTTGGAGAACTTCACTACAAATATTATCTGGTTGTATCTGATACAGATGAACAGGAAATGGTTGAAGTCGTTGGGT
Protein sequenceShow/hide protein sequence
LKKLLNWLEEQFIMQHSKTGRVFIMLDQMDGRNYLVMMLENFTTNIIWLYLIQMNRKWLKSLG