; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G006700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G006700
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNuclear pore complex protein NUP54
Genome locationchr04:6156046..6161014
RNA-Seq ExpressionLsi04G006700
SyntenyLsi04G006700
Gene Ontology termsGO:0006607 - NLS-bearing protein import into nucleus (biological process)
GO:0006999 - nuclear pore organization (biological process)
GO:0036228 - protein localization to nuclear inner membrane (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domainsIPR024864 - Nucleoporin Nup54/Nup57/Nup44
IPR025712 - Nucleoporin Nup54, alpha-helical domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573649.1 Nuclear pore complex protein NUP54, partial [Cucurbita argyrosperma subsp. sororia]9.5e-19092.01Show/hide
Query:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAATG
        FG   S+ AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGN SSTPAFGTPS+SSFATGFGSSLFSTPFSSQPSQ QQQ QQSPLF  PAATG
Subjt:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAATG

Query:  FGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW
        FGFQTPFAAPQS+PFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKDD GNPKYAFK LLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW
Subjt:  FGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW

Query:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQ
        PQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVK LQRHFLADTLPW+QRLKQKEQGLQRRLLR+MR+VEALESKGCRVP+M GEAELAE+LALITRQ
Subjt:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQ

Query:  LKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        L+GSGA+LSRRV+NLLTIT GQANGSGAGNSIYLQGS KIHEQSLADMQEVLQQQTEAIARLG VLKRDVRDMEIIMAEDKEM DD S
Subjt:  LKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

XP_004135312.1 nuclear pore complex protein NUP54 [Cucumis sativus]2.7e-20096.4Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT
        MFGAQPSSSAFGTPQS+PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSP+FPQ +AT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT

Query:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPF APQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDD GNPKYAFKHLLFSVTDPQYR KP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR LLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR

Query:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGA+LSRRVQNLLT+TRGQANGSG GNSIY QGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

XP_008446043.1 PREDICTED: nuclear pore complex protein NUP54 [Cucumis melo]2.0e-20097.17Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT
        MFGAQ SSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQS LFPQ +AT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT

Query:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDD GNPKYAFKHLLFSVTDPQYRAKP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPV+KGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR

Query:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGA+LS+RVQNLLTITRGQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

XP_022151739.1 nuclear pore complex protein NUP54 [Momordica charantia]9.5e-19092.8Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT
        MFGAQPSSS         AFGTPQSTPAFGTP+STPAFGTPSASPAFGNLSSTPAFGTPSTS+F TGFGSSLFSTPFSSQPSQQ QQ QQSPLF QP AT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT

Query:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKD+ GNPKYAFKHLLFSVTDPQ+RAKPAGVSDIMWAEAM KLEGMESADRERL
Subjt:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQRHFLADTLPWVQRL+QKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR

Query:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGA+LSRRVQNLLT TRGQANGS +GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLG VLKRDVRDMEIIMAEDKEMTDDAS
Subjt:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

XP_038893426.1 nuclear pore complex protein NUP54 [Benincasa hispida]1.5e-20398.2Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT
        MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQ QQQLQQSPLFPQPAAT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT

Query:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDD GNPKYAFKHLLFSVTDPQYR KPAGVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDS+RLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR

Query:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGA+LSRRVQNLLTITRGQANGS AGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAED+EMTDDAS
Subjt:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

TrEMBL top hitse value%identityAlignment
A0A0A0KPW8 Nup54 domain-containing protein1.3e-20096.4Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT
        MFGAQPSSSAFGTPQS+PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSP+FPQ +AT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT

Query:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPF APQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDD GNPKYAFKHLLFSVTDPQYR KP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR LLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR

Query:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGA+LSRRVQNLLT+TRGQANGSG GNSIY QGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

A0A1S3BE47 nuclear pore complex protein NUP549.9e-20197.17Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT
        MFGAQ SSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQS LFPQ +AT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT

Query:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDD GNPKYAFKHLLFSVTDPQYRAKP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPV+KGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR

Query:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGA+LS+RVQNLLTITRGQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

A0A5A7SSX4 Nuclear pore complex protein NUP549.9e-20197.17Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT
        MFGAQ SSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQS LFPQ +AT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT

Query:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDD GNPKYAFKHLLFSVTDPQYRAKP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPV+KGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR

Query:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGA+LS+RVQNLLTITRGQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

A0A6J1DDY9 nuclear pore complex protein NUP544.6e-19092.8Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT
        MFGAQPSSS         AFGTPQSTPAFGTP+STPAFGTPSASPAFGNLSSTPAFGTPSTS+F TGFGSSLFSTPFSSQPSQQ QQ QQSPLF QP AT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT

Query:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKD+ GNPKYAFKHLLFSVTDPQ+RAKPAGVSDIMWAEAM KLEGMESADRERL
Subjt:  GFGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQRHFLADTLPWVQRL+QKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR

Query:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGA+LSRRVQNLLT TRGQANGS +GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLG VLKRDVRDMEIIMAEDKEMTDDAS
Subjt:  QLKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

A0A6J1G105 nuclear pore complex protein NUP542.5e-18891.75Show/hide
Query:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAATG
        FG   S+ AFGTPQSTPAFGTPQSTPAFGTP STPAFGTPSASPAFGN SSTPAFGTPS+SSFATGFGSSLFSTPFSSQPSQQQQ  QQSPLF  PAATG
Subjt:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAATG

Query:  FGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW
        FGFQTPFAAPQS+PFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKDD GNPKYAFK LLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW
Subjt:  FGFQTPFAAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW

Query:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQ
        PQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVK LQRHFLADTLPW+QRLKQKEQGLQRRLLR+MR+VEALESKGCRVP+M GEAELAE+LALITRQ
Subjt:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQ

Query:  LKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        L+GSGA+LSRRV+NLLTIT GQANGSGAGNSIYLQGS KIHEQSLADMQEVLQQQTEAIARLG VLKRDVRDMEIIMAEDKEM DD S
Subjt:  LKGSGADLSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

SwissProt top hitse value%identityAlignment
Q8GYF7 Nuclear pore complex protein NUP541.9e-14071.69Show/hide
Query:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFSSQPSQQQQQLQQ----SPLFPQPAATGFGFQTPF----AA
        FGTP S+P+FGTP+STPAFGT  +SPAFG  S+TPAFGTPS  SF++ GFGSSLFS+PFSSQ  QQQQQ QQ    S LF Q  ++ FGFQ+PF      
Subjt:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFSSQPSQQQQQLQQ----SPLFPQPAATGFGFQTPF----AA

Query:  PQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD
         Q TPFPNAQLTTQMAPVAP+P+SLADRD+QAI+EAYK+D  NPKYAF+HLLFSVT+PQYR KPA VSDIMWAEAM+KLEGM+S +RERLWPQLVQGFKD
Subjt:  PQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD

Query:  LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGADLS
        LSQRLK+QDEV++SD +R++ TQSNVKMLQRH  A T P ++RL+QKEQ LQRR+LRVMRI+E LE KG R+P+ KGEAEL+EKL  ITRQ+KG GA+LS
Subjt:  LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGADLS

Query:  RRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDA
        RRVQ+L TI+R QAN   AG+S+YL GS KI EQSL DMQEVLQQ+TEAI RLGNVLKRD+RDMEI++AED EM  D+
Subjt:  RRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDA

Q9V6B9 Probable nucleoporin Nup543.3e-0438.17Show/hide
Query:  FGAQPSSS-AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGN--LSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPL--FPQ
        FGAQ +S+ AFG   +T AFG   +  AFG  A+ PAFG  + + AFG     STPAFG  +T++  TG G   F   F + P+  Q  L  +P      
Subjt:  FGAQPSSS-AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGN--LSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPL--FPQ

Query:  PAATGFGFQTPFAAPQSTPFPNAQLTTQMAP
        PA +GFG Q   +   ++ F     TT  AP
Subjt:  PAATGFGFQTPFAAPQSTPFPNAQLTTQMAP

Q9VDV3 Nuclear pore complex protein Nup587.0e-1040.88Show/hide
Query:  FGAQPSSS-AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT
        FGA  +++ AFGT  +TPAFG P +T AFG PA+TPAFG  +A+PAFG  ++TPAFG P+ +S    FG+   +T F +  S Q              A 
Subjt:  FGAQPSSS-AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAAT

Query:  GFGFQTP-FAAPQSTPFPNAQLTTQMAPVAPLPFSLA
         F F TP  +AP + P      TT     A +P SL+
Subjt:  GFGFQTP-FAAPQSTPFPNAQLTTQMAPVAPLPFSLA

Arabidopsis top hitse value%identityAlignment
AT1G24310.1 unknown protein1.3e-14171.69Show/hide
Query:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFSSQPSQQQQQLQQ----SPLFPQPAATGFGFQTPF----AA
        FGTP S+P+FGTP+STPAFGT  +SPAFG  S+TPAFGTPS  SF++ GFGSSLFS+PFSSQ  QQQQQ QQ    S LF Q  ++ FGFQ+PF      
Subjt:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFSSQPSQQQQQLQQ----SPLFPQPAATGFGFQTPF----AA

Query:  PQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD
         Q TPFPNAQLTTQMAPVAP+P+SLADRD+QAI+EAYK+D  NPKYAF+HLLFSVT+PQYR KPA VSDIMWAEAM+KLEGM+S +RERLWPQLVQGFKD
Subjt:  PQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD

Query:  LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGADLS
        LSQRLK+QDEV++SD +R++ TQSNVKMLQRH  A T P ++RL+QKEQ LQRR+LRVMRI+E LE KG R+P+ KGEAEL+EKL  ITRQ+KG GA+LS
Subjt:  LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGADLS

Query:  RRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDA
        RRVQ+L TI+R QAN   AG+S+YL GS KI EQSL DMQEVLQQ+TEAI RLGNVLKRD+RDMEI++AED EM  D+
Subjt:  RRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGAGCTCAACCGTCCTCCTCCGCCTTCGGCACTCCACAATCAACTCCGGCCTTTGGCACTCCGCAATCAACTCCGGCATTTGGCACGCCGGCCTCCACTCCCGC
CTTCGGAACTCCATCGGCGTCTCCTGCATTTGGAAACCTTTCATCAACTCCTGCCTTCGGAACTCCATCTACGTCGTCTTTTGCCACCGGCTTCGGCTCGTCTCTCTTCT
CCACTCCATTCTCTTCTCAGCCTTCACAACAGCAGCAGCAGTTGCAGCAATCGCCGCTGTTTCCGCAACCAGCTGCCACAGGATTCGGTTTCCAGACTCCGTTTGCAGCG
CCTCAGTCCACTCCATTTCCAAATGCTCAACTGACCACTCAGATGGCCCCGGTGGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATTCAAGCAATTGTTGAAGCTTA
CAAGGATGACACAGGAAACCCTAAGTATGCTTTCAAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCTGGTGTATCGGATATAATGTGGGCTG
AGGCAATGGCAAAGCTTGAAGGCATGGAAAGTGCTGATAGAGAGCGATTGTGGCCGCAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGCTTGAAGATTCAAGATGAA
GTCATTCTCTCTGATTCTGAGAGACTTCGGATGACTCAAAGCAATGTCAAAATGCTTCAGAGGCATTTTCTAGCTGATACTCTACCTTGGGTTCAAAGATTGAAACAGAA
GGAGCAAGGTCTTCAAAGGCGTCTGTTGAGAGTTATGAGAATTGTGGAGGCACTGGAAAGTAAGGGTTGTCGAGTGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGA
AGTTAGCTTTGATAACGAGGCAGTTGAAAGGATCTGGGGCAGATCTTTCAAGGAGGGTACAAAATTTACTTACAATTACTCGTGGTCAAGCAAATGGCTCCGGTGCTGGT
AACTCCATCTATCTTCAAGGATCAGCAAAAATACACGAACAGAGTCTTGCTGATATGCAGGAGGTTTTGCAGCAACAGACCGAGGCCATTGCTAGACTTGGAAATGTTTT
AAAGCGGGATGTTAGAGACATGGAAATCATAATGGCTGAAGACAAAGAGATGACAGATGATGCGAGTTAA
mRNA sequenceShow/hide mRNA sequence
AAAACAATTCCCAAATAATTCGCGGCAAAAGGATACAATGCCCTAGACTTCCTTGTTCCGTCCTCACTAAACCACGGCTCTGAAAATCTGAGAGAAGCACCATTTCGTCG
AGTAGAAGTTTCGAGTCTCTAATGGCGATTTCGGTTTGAGTCGTTAGGGCTTCCCTTCGATCCTCCGGTGCAAATACAATGTTCGGAGCTCAACCGTCCTCCTCCGCCTT
CGGCACTCCACAATCAACTCCGGCCTTTGGCACTCCGCAATCAACTCCGGCATTTGGCACGCCGGCCTCCACTCCCGCCTTCGGAACTCCATCGGCGTCTCCTGCATTTG
GAAACCTTTCATCAACTCCTGCCTTCGGAACTCCATCTACGTCGTCTTTTGCCACCGGCTTCGGCTCGTCTCTCTTCTCCACTCCATTCTCTTCTCAGCCTTCACAACAG
CAGCAGCAGTTGCAGCAATCGCCGCTGTTTCCGCAACCAGCTGCCACAGGATTCGGTTTCCAGACTCCGTTTGCAGCGCCTCAGTCCACTCCATTTCCAAATGCTCAACT
GACCACTCAGATGGCCCCGGTGGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATTCAAGCAATTGTTGAAGCTTACAAGGATGACACAGGAAACCCTAAGTATGCTT
TCAAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCTGGTGTATCGGATATAATGTGGGCTGAGGCAATGGCAAAGCTTGAAGGCATGGAAAGT
GCTGATAGAGAGCGATTGTGGCCGCAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGCTTGAAGATTCAAGATGAAGTCATTCTCTCTGATTCTGAGAGACTTCGGAT
GACTCAAAGCAATGTCAAAATGCTTCAGAGGCATTTTCTAGCTGATACTCTACCTTGGGTTCAAAGATTGAAACAGAAGGAGCAAGGTCTTCAAAGGCGTCTGTTGAGAG
TTATGAGAATTGTGGAGGCACTGGAAAGTAAGGGTTGTCGAGTGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGTTAGCTTTGATAACGAGGCAGTTGAAAGGA
TCTGGGGCAGATCTTTCAAGGAGGGTACAAAATTTACTTACAATTACTCGTGGTCAAGCAAATGGCTCCGGTGCTGGTAACTCCATCTATCTTCAAGGATCAGCAAAAAT
ACACGAACAGAGTCTTGCTGATATGCAGGAGGTTTTGCAGCAACAGACCGAGGCCATTGCTAGACTTGGAAATGTTTTAAAGCGGGATGTTAGAGACATGGAAATCATAA
TGGCTGAAGACAAAGAGATGACAGATGATGCGAGTTAAAAGAAATTGAGTTCACATTTCTAGCCATTGTTCTGTTTTATTATTAGATATACTTGGCTTGATTTTTCCAAA
TGGATAAATTAAAATTCGTTTTCAGAACTTTTATGTACTGCTCAAGGTGCTAGCCGACGTCTCATTTGAGAGACGTTGGTCAGTACTTGGTTAAGGTAGGTTCAACTTTA
ACTGCTTAATACCTATGCAATTTTGATTTGATGCAGTGTTAAAAGGCTGAGAACTGTAATGGCTCATAACTCATAAAGCAGCATGAACAGTTGCTATGTTGGTCTCTTAA
CGTACTCAGCATCATCAGCAAGGCCAGGTGAGTGAGGTGGCTCTCCCACTTTAAAATATTAGCATTTGGGGATGTTAGGCATCTTATTATAAAAGCTTATGCAAAGAGGA
AAATGGGTTGCGTATAGTATATAGTTGTTAGGTATGCTTTTATATATATATATGTGTGTGTATATAAATAACTTTCATTAACATGAGAGGAAAAACAAAAAGAGGAGGAG
ATGAGATATTTCCACACATAAAGGGGCTGTTGGAGGTACTGAGTTGATTATTTTAGTTTGTGAGTTATAAATCTATAGTATATAGTTGGTTCTGGGAAAAATCTAGAGCA
AGGACAATGATCACGAATACCCACGGAAGAACCTTGAAGTAGACATCAAAATTTTTATGTGAGAATTTGAATTCGTACCCTTGAGGCAGTATTGTTGAAATATCGGATAA
GCATAGGTTATTTCAGCTTTGATACAATTAGCAATAGGTGTTTAGTGGTTTTGAGGCTAGAATATTAGTTAATCACAACTTTTAAAATTTATTAATTAGAGCTCATATAA
TAATGATTATTTATTTTGGTA
Protein sequenceShow/hide protein sequence
MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQPAATGFGFQTPFAA
PQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDTGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDE
VILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGADLSRRVQNLLTITRGQANGSGAG
NSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS