CuGenDBv2

Gene ID	Lsi04G006840
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Heat shock protein DnaJ, cysteine-rich domain containing protein
Genome location	chr04:6271211..6271513
RNA-Seq Expression	Lsi04G006840
Synteny	Lsi04G006840
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008446034.1 PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo]

6.1e-48

Show/hide

Query:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS
        MVPIVL+QLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRP+PAQIS+RRSNYPSSSS
Subjt:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS

XP_011655560.2 uncharacterized protein LOC105435558 [Cucumis sativus]

1.0e-47

Show/hide

Query:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS
        MVPIVL+QLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNG+GRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIP+QISVRRSNYPSSSS
Subjt:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS

XP_022151926.1 uncharacterized protein LOC111019780 [Momordica charantia]

3.1e-44

90.91

Show/hide

Query:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSS
        MVP+VLTQLATGLSVLAGAVLVKSVMD KPMAG FPRCPSCNGTGRV CLCSRWSDGD+GCRTCSGSGRMFCSSCGG+GTGRPIPAQ+SVRR+N+PSSS
Subjt:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSS

XP_023552719.1 uncharacterized protein LOC111810279 [Cucurbita pepo subsp. pepo]

1.1e-44

Show/hide

Query:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS
        MVP+VLTQLATGLSVLAGAVLVKSVMD KPMAGSFPRCPSCNGTGRVPCLCSRWSD DIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRR+NYP SSS
Subjt:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS

XP_038892730.1 uncharacterized protein LOC120081711 [Benincasa hispida]

5.5e-49

100

Show/hide

Query:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS
        MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS
Subjt:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPV9 Uncharacterized protein

9.4e-47

Show/hide

Query:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS
        MVPIVL+QLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNG+GRVPCLCSRWSDGDIG RTCSGSGRMFCSSCGGSGTGRPIP+QISVRRSNYPSSSS
Subjt:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS

A0A1S3BEY5 uncharacterized protein LOC103488885

2.9e-48

Show/hide

Query:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS
        MVPIVL+QLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRP+PAQIS+RRSNYPSSSS
Subjt:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS

A0A6J1DG38 uncharacterized protein LOC111019780

1.5e-44

90.91

Show/hide

Query:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSS
        MVP+VLTQLATGLSVLAGAVLVKSVMD KPMAG FPRCPSCNGTGRV CLCSRWSDGD+GCRTCSGSGRMFCSSCGG+GTGRPIPAQ+SVRR+N+PSSS
Subjt:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSS

A0A6J1GZK6 uncharacterized protein LOC111458584

3.4e-44

Show/hide

Query:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS
        MVPIVLTQLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNGTGRVPCLCSRWSD DIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRR+NYP SSS
Subjt:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS

A0A6J1K8V1 uncharacterized protein LOC111493328

3.4e-44

Show/hide

Query:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS
        MVPIVLTQLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNGTGRVPCLCSRWSD DIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRR+NYP SSS
Subjt:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G44020.1 thylakoid lumenal P17.1 protein

9.8e-04

Show/hide

Query:  CPSCNGTGRVPCL-C----SRWSDGDIGCRTCSGSGRMFCSSCGGSGTGR
        C  C G G   C+ C     +   G + C+ C GSG +FC  CGGSG  R
Subjt:  CPSCNGTGRVPCL-C----SRWSDGDIGCRTCSGSGRMFCSSCGGSGTGR

AT5G43260.1 chaperone protein dnaJ-related

1.7e-40

78.12

Show/hide

Query:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYP
        M PIV+TQLATG+SVLAGAV +KSVMD KPMAG FPRCP+CNGTGRV C CSRWSDGD+GCR CSGSGR  CS+CGGSGTGRP+PAQI+V+  N P
Subjt:  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTCCCATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCG
CTGCCCCTCCTGCAACGGCACCGGCCGCGTCCCCTGCCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGCCGTACCTGCTCCGGCTCTGGCCGCATGTTCTGCAGCA
GCTGTGGCGGTTCCGGCACCGGCCGCCCTATCCCCGCCCAAATCTCCGTCCGCCGATCCAATTATCCCTCCTCTTCCTCCTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS

Lsi04G006840 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome