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Lsi04G006850 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G006850
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionalpha-ketoglutarate-dependent dioxygenase alkB
Genome locationchr04:6276120..6276427
RNA-Seq ExpressionLsi04G006850
SyntenyLsi04G006850
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0035513 - oxidative RNA demethylation (biological process)
GO:0035552 - oxidative single-stranded DNA demethylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0008198 - ferrous iron binding (molecular function)
GO:0035515 - oxidative RNA demethylase activity (molecular function)
GO:0035516 - oxidative DNA demethylase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648677.1 hypothetical protein Csa_009164 [Cucumis sativus]7.8e-1081.82Show/hide
Query:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
        VPRIFI EESEEISFLET  +NQ+D+H LEYIRTSRININIRQ+
Subjt:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
XP_004135327.1 alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Cucumis sativus]7.8e-1081.82Show/hide
Query:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
        VPRIFI EESEEISFLET  +NQ+D+H LEYIRTSRININIRQ+
Subjt:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
XP_008446031.1 PREDICTED: LOW QUALITY PROTEIN: alpha-ketoglutarate-dependent dioxygenase alkB [Cucumis melo]2.1e-1084.09Show/hide
Query:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
        VPRIFI EESEEISFLE   SNQ+D+HFLEYIRTSRININIRQ+
Subjt:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
XP_031740902.1 alpha-ketoglutarate-dependent dioxygenase alkB isoform X2 [Cucumis sativus]7.8e-1081.82Show/hide
Query:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
        VPRIFI EESEEISFLET  +NQ+D+H LEYIRTSRININIRQ+
Subjt:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
XP_038891364.1 alpha-ketoglutarate-dependent dioxygenase alkB [Benincasa hispida]1.7e-0979.55Show/hide
Query:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
        VPRIFI EESEEIS LE  FSNQ+D+HFLEYI+ SRININIRQ+
Subjt:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
TrEMBL top hitse value%identityAlignment
A0A0A0KS00 Fe2OG dioxygenase domain-containing protein3.8e-1081.82Show/hide
Query:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
        VPRIFI EESEEISFLET  +NQ+D+H LEYIRTSRININIRQ+
Subjt:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
A0A1S3BE32 LOW QUALITY PROTEIN: alpha-ketoglutarate-dependent dioxygenase alkB1.0e-1084.09Show/hide
Query:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
        VPRIFI EESEEISFLE   SNQ+D+HFLEYIRTSRININIRQ+
Subjt:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
A0A6J1DG90 alpha-ketoglutarate-dependent dioxygenase alkB3.2e-0977.27Show/hide
Query:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
        VPRIFI  E++E S LE QFSNQ+D+HFLEYIRTSRININIRQ+
Subjt:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
A0A6J1FZQ9 alpha-ketoglutarate-dependent dioxygenase alkB3.2e-0977.27Show/hide
Query:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
        VPRIF  EESEEIS LE +FS+++D+HFLEYIRTSRININIRQ+
Subjt:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
A0A6J1HQB4 alpha-ketoglutarate-dependent dioxygenase alkB7.1e-0975Show/hide
Query:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
        VPRIF  EESEEIS LE +FS+++D+HFLEY+RTSRININIRQ+
Subjt:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
SwissProt top hitse value%identityAlignment
Q9SA98 Alpha-ketoglutarate-dependent dioxygenase alkB5.5e-0654.55Show/hide
Query:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
        +PRIF  EE+ +I  LE++ S+++   F EYI+TSRININIRQ+
Subjt:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
Arabidopsis top hitse value%identityAlignment
AT1G11780.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein3.9e-0754.55Show/hide
Query:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL
        +PRIF  EE+ +I  LE++ S+++   F EYI+TSRININIRQ+
Subjt:  VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAGTGTACCACGGATCTTCATCCATGAAGAAAGTGAAGAAATATCTTTTCTTGAAACACAGTTCTCAAATCAAAATGATATGCACTTTCTGGAATACATAAGAAC
TTCAAGAATAAACATCAACATTAGGCAGCTTCAAGATGGTCTTTGGATTGCTAGAAACTTTTGCCGGGATGATGGGGAAGGGAGCGGCTCTGTAAATTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGAGTGTACCACGGATCTTCATCCATGAAGAAAGTGAAGAAATATCTTTTCTTGAAACACAGTTCTCAAATCAAAATGATATGCACTTTCTGGAATACATAAGAAC
TTCAAGAATAAACATCAACATTAGGCAGCTTCAAGATGGTCTTTGGATTGCTAGAAACTTTTGCCGGGATGATGGGGAAGGGAGCGGCTCTGTAAATTCATAG
Protein sequenceShow/hide protein sequence
MPSVPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQLQDGLWIARNFCRDDGEGSGSVNS