CuGenDBv2

Gene ID	Lsi04G006890
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	RanBP2-type zinc finger protein
Genome location	chr04:6312967..6321897
RNA-Seq Expression	Lsi04G006890
Synteny	Lsi04G006890
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034188.1 ranBP2-type zinc finger protein [Cucumis melo var. makuwa]

1.6e-45

58.73

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-
        MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN                        KSAAKP+QAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG 
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-

Query:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA
                                                         AVYG+PPIMDRYGMALPMGPGAMGPRPGFFPD+MSQKK A
Subjt:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA

KAG6601605.1 RanBP2-type zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia]

3.5e-45

60.44

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-
        MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN                        KSAAKP+QA QGYSYSAPYMGSG PSSMYPGVPPYGSSIFNG 
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-

Query:  ------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA
                                                  AVYGMPPIMDRYGMALPMGPG MGPRPGFFPDDMSQKK A
Subjt:  ------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA

TYK15732.1 ranBP2-type zinc finger protein [Cucumis melo var. makuwa]

1.6e-45

58.73

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-
        MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN                        KSAAKP+QAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG 
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-

Query:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA
                                                         AVYG+PPIMDRYGMALPMGPGAMGPRPGFFPD+MSQKK A
Subjt:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA

XP_004135329.1 ranBP2-type zinc finger protein At1g67325 [Cucumis sativus]

1.6e-45

58.73

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-
        MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN                        KSAAKP+QAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG 
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-

Query:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA
                                                         AVYG+PPIMDRYGMALPMGPGAMGPRPGFFPD+MSQKK A
Subjt:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA

XP_038893077.1 ranBP2-type zinc finger protein At1g67325 [Benincasa hispida]

4.1e-46

59.79

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-
        MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN                        KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG 
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-

Query:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA
                                                         AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDD+SQKK A
Subjt:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPV4 Uncharacterized protein

7.6e-46

58.73

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-
        MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN                        KSAAKP+QAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG 
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-

Query:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA
                                                         AVYG+PPIMDRYGMALPMGPGAMGPRPGFFPD+MSQKK A
Subjt:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA

A0A1S3BE27 ranBP2-type zinc finger protein At1g67325

7.6e-46

58.73

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-
        MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN                        KSAAKP+QAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG 
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-

Query:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA
                                                         AVYG+PPIMDRYGMALPMGPGAMGPRPGFFPD+MSQKK A
Subjt:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA

A0A5A7SU69 RanBP2-type zinc finger protein

7.6e-46

58.73

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-
        MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN                        KSAAKP+QAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG 
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-

Query:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA
                                                         AVYG+PPIMDRYGMALPMGPGAMGPRPGFFPD+MSQKK A
Subjt:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA

A0A5D3CW31 RanBP2-type zinc finger protein

7.6e-46

58.73

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-
        MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN                        KSAAKP+QAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG 
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-

Query:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA
                                                         AVYG+PPIMDRYGMALPMGPGAMGPRPGFFPD+MSQKK A
Subjt:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA

A0A6J1G258 ranBP2-type zinc finger protein At1g67325-like isoform X2

8.4e-45

57.67

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-
        MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN                        KSAAKP+ APQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG 
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNG-

Query:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA
                                                         AVYGMPPIMDRYG+ALPMGPG MGPRPGFFPDD+SQKK A
Subjt:  -------------------------------------------------AVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKSA

SwissProt top hits

e value

%identity

Alignment

Q8GZ43 RanBP2-type zinc finger protein At1g67325

3.8e-26

40.1

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGA
        MSQVD+RNSSAAKRARTDG RREDDW CPSCGN                        KSA KP+Q  QG+S    Y+GSG P  +Y G  PYGS +FNG+
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGA

Query:  --------------------------------------------------VYGMPPIMDRYGMALPMGPG---AMGPRPGFFPDDMSQKKSA
                                                          +YGMPP +DRYG+ + MGPG   AM PRP F+PD+ SQK+ +
Subjt:  --------------------------------------------------VYGMPPIMDRYGMALPMGPG---AMGPRPGFFPDDMSQKKSA

Arabidopsis top hits

e value

%identity

Alignment

AT1G67325.1 Ran BP2/NZF zinc finger-like superfamily protein

2.7e-27

40.1

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGA
        MSQVD+RNSSAAKRARTDG RREDDW CPSCGN                        KSA KP+Q  QG+S    Y+GSG P  +Y G  PYGS +FNG+
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGA

Query:  --------------------------------------------------VYGMPPIMDRYGMALPMGPG---AMGPRPGFFPDDMSQKKSA
                                                          +YGMPP +DRYG+ + MGPG   AM PRP F+PD+ SQK+ +
Subjt:  --------------------------------------------------VYGMPPIMDRYGMALPMGPG---AMGPRPGFFPDDMSQKKSA

AT1G67325.2 Ran BP2/NZF zinc finger-like superfamily protein

2.7e-27

40.1

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Query:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGA
        MSQVD+RNSSAAKRARTDG RREDDW CPSCGN                        KSA KP+Q  QG+S    Y+GSG P  +Y G  PYGS +FNG+
Subjt:  MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGN------------------------KSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGA

Query:  --------------------------------------------------VYGMPPIMDRYGMALPMGPG---AMGPRPGFFPDDMSQKKSA
                                                          +YGMPP +DRYG+ + MGPG   AM PRP F+PD+ SQK+ +
Subjt:  --------------------------------------------------VYGMPPIMDRYGMALPMGPG---AMGPRPGFFPDDMSQKKSA

Sequences

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CDS sequence

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ATGTCTCAGGTTGATAGCAGGAATTCCTCTGCAGCCAAACGTGCTAGAACTGATGGTAGCCGAAGGGAAGATGATTGGACTTGTCCTAGTTGTGGAAACAAATCTGCTGC
CAAGCCCATTCAAGCTCCTCAGGGATACTCGTATTCTGCCCCTTACATGGGGTCAGGTGCACCCTCTTCAATGTATCCTGGTGTACCACCATATGGTTCCTCCATATTCA
ACGGTGCAGTGTATGGTATGCCACCCATTATGGATCGCTATGGCATGGCTTTGCCAATGGGCCCTGGCGCCATGGGTCCAAGGCCAGGTTTTTTTCCAGATGATATGTCG
CAGAAGAAGAGTGCAGTAATGTTCAAGATGCATTCTCATAGTTGA

mRNA sequence

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Protein sequence

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MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNKSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGAVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMS
QKKSAVMFKMHSHS

Lsi04G006890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome