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Lsi04G006980 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G006980
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCysteine synthase
Genome locationchr04:6368485..6370729
RNA-Seq ExpressionLsi04G006980
SyntenyLsi04G006980
Gene Ontology termsGO:0006535 - cysteine biosynthetic process from serine (biological process)
GO:0009567 - double fertilization forming a zygote and endosperm (biological process)
GO:0009860 - pollen tube growth (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0004124 - cysteine synthase activity (molecular function)
InterPro domainsIPR036052 - Tryptophan synthase beta subunit-like PLP-dependent enzyme


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034181.1 cysteine synthase [Cucumis melo var. makuwa]8.1e-2868.22Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGFIPNNLDESVVDEVIEI+DEEA+ETAKQLAMQEGLL                           V+FASFGERYLSS LF SIREEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHEP
        ENMQHEP
Subjt:  ENMQHEP

ONM30907.1 Cysteine synthase mitochondrial [Zea mays]6.9e-2777.5Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLVIFASFGERYLSSDLFKSIREECENMQHEP
        G  GPHKIQGIGAGF+P NLD  ++DEVIEIS +EA+ETAKQLA+QEGLLV+F SFGERYLSS L++SIREECENMQ EP
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLVIFASFGERYLSSDLFKSIREECENMQHEP

XP_004135335.1 cysteine synthase [Cucumis sativus]6.2e-2869.16Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGFIPNNLDE VVDEVIEISDEEAIETAKQLAMQEGLL                           V+FASFGERYLSS LF SIREEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHEP
        ENMQHEP
Subjt:  ENMQHEP

XP_008446019.1 PREDICTED: cysteine synthase [Cucumis melo]8.1e-2868.22Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGFIPNNLDESVVDEVIEI+DEEA+ETAKQLAMQEGLL                           V+FASFGERYLSS LF SIREEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHEP
        ENMQHEP
Subjt:  ENMQHEP

XP_038891996.1 cysteine synthase-like isoform X1 [Benincasa hispida]5.2e-2767.29Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  G HKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLA+QEGLL                           V+FASFGERYLSS LF+S+REEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHEP
        ENMQHEP
Subjt:  ENMQHEP

TrEMBL top hitse value%identityAlignment
A0A0A0KPX9 Cysteine synthase3.0e-2869.16Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGFIPNNLDE VVDEVIEISDEEAIETAKQLAMQEGLL                           V+FASFGERYLSS LF SIREEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHEP
        ENMQHEP
Subjt:  ENMQHEP

A0A1D6MPD0 Cysteine synthase mitochondrial3.3e-2777.5Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLVIFASFGERYLSSDLFKSIREECENMQHEP
        G  GPHKIQGIGAGF+P NLD  ++DEVIEIS +EA+ETAKQLA+QEGLLV+F SFGERYLSS L++SIREECENMQ EP
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLVIFASFGERYLSSDLFKSIREECENMQHEP

A0A1S3BE19 Cysteine synthase3.9e-2868.22Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGFIPNNLDESVVDEVIEI+DEEA+ETAKQLAMQEGLL                           V+FASFGERYLSS LF SIREEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHEP
        ENMQHEP
Subjt:  ENMQHEP

A0A5A7SXJ3 Cysteine synthase3.9e-2868.22Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGFIPNNLDESVVDEVIEI+DEEA+ETAKQLAMQEGLL                           V+FASFGERYLSS LF SIREEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHEP
        ENMQHEP
Subjt:  ENMQHEP

A0A5D3CZX6 Cysteine synthase3.9e-2868.22Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGFIPNNLDESVVDEVIEI+DEEA+ETAKQLAMQEGLL                           V+FASFGERYLSS LF SIREEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHEP
        ENMQHEP
Subjt:  ENMQHEP

SwissProt top hitse value%identityAlignment
O81155 Cysteine synthase, chloroplastic/chromoplastic8.1e-2355.66Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGFIP NLD+ V+DEVIEIS +EA+ETA+ LA+QEGLL                           V+F S+GERYLSS LF+SIREEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHE
        E M+ E
Subjt:  ENMQHE

P32260 Cysteine synthase, chloroplastic/chromoplastic1.6e-2356.6Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQG+GAGF+P+NLD  V+DEVIE+S EEA+E AKQLAM+EGLL                           V+F SFGERYLSS LF+SIREEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHE
        ENM+ E
Subjt:  ENMQHE

P47999 Cysteine synthase, chloroplastic/chromoplastic3.7e-2356.6Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGF+P NLD ++VDE I IS EEAIET+KQLA+QEGLL                           V+F SFGERYLS+ LF+SIREEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHE
        E MQ E
Subjt:  ENMQHE

Q43317 Cysteine synthase1.1e-1950.47Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLV---------------------------IFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGFIP  LD +++DEVI++S EE+IETAK LA++EGLLV                           +F SFGERYLS+ LF+S++ E 
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLV---------------------------IFASFGERYLSSDLFKSIREEC

Query:  ENMQHEP
        ENM  EP
Subjt:  ENMQHEP

Q43725 Cysteine synthase, mitochondrial2.4e-2255.66Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGFIP NLD+ ++DEVI IS EEAIETAKQLA++EGL+                           V+F SFGERYLS+ LF+SIREE 
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHE
        E MQ E
Subjt:  ENMQHE

Arabidopsis top hitse value%identityAlignment
AT2G43750.1 O-acetylserine (thiol) lyase B2.6e-2456.6Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGF+P NLD ++VDE I IS EEAIET+KQLA+QEGLL                           V+F SFGERYLS+ LF+SIREEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHE
        E MQ E
Subjt:  ENMQHE

AT2G43750.2 O-acetylserine (thiol) lyase B2.6e-2456.6Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGF+P NLD ++VDE I IS EEAIET+KQLA+QEGLL                           V+F SFGERYLS+ LF+SIREEC
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHE
        E MQ E
Subjt:  ENMQHE

AT3G22460.1 O-acetylserine (thiol) lyase (OAS-TL) isoform A21.6e-1844.64Show/hide
Query:  PLYYYGNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLV---------------------------IFASFGERYLSSDLFKS
        P+   G  GPHKIQGIGAGFIP  LD  ++DEV+++S EE+I+ A+ LA +EGLLV                           +F SFGERYLS+ LF +
Subjt:  PLYYYGNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLV---------------------------IFASFGERYLSSDLFKS

Query:  IREECENMQHEP
         R+E E M  EP
Subjt:  IREECENMQHEP

AT3G59760.1 O-acetylserine (thiol) lyase isoform C1.7e-2355.66Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGFIP NLD+ ++DEVI IS EEAIETAKQLA++EGL+                           V+F SFGERYLS+ LF+SIREE 
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHE
        E MQ E
Subjt:  ENMQHE

AT3G59760.3 O-acetylserine (thiol) lyase isoform C1.7e-2355.66Show/hide
Query:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC
        G  GPHKIQGIGAGFIP NLD+ ++DEVI IS EEAIETAKQLA++EGL+                           V+F SFGERYLS+ LF+SIREE 
Subjt:  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------------------------VIFASFGERYLSSDLFKSIREEC

Query:  ENMQHE
        E MQ E
Subjt:  ENMQHE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGGTGTCCATTATATTATTATGGAAACACAGGACCTCATAAAATTCAAGGAATTGGAGCTGGTTTTATACCCAATAATTTGGACGAAAGTGTAGTTGATGAAGT
CATCGAGATATCCGATGAAGAAGCTATTGAGACTGCAAAACAATTGGCCATGCAGGAAGGCTTACTGGTTATATTCGCCAGCTTTGGCGAGCGATACCTATCCTCAGACC
TTTTCAAGTCAATCCGAGAAGAATGTGAAAACATGCAACATGAGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGGTGTCCATTATATTATTATGGAAACACAGGACCTCATAAAATTCAAGGAATTGGAGCTGGTTTTATACCCAATAATTTGGACGAAAGTGTAGTTGATGAAGT
CATCGAGATATCCGATGAAGAAGCTATTGAGACTGCAAAACAATTGGCCATGCAGGAAGGCTTACTGGTTATATTCGCCAGCTTTGGCGAGCGATACCTATCCTCAGACC
TTTTCAAGTCAATCCGAGAAGAATGTGAAAACATGCAACATGAGCCATGAGCCATGAGCCATGAAGTACATTTTATTAGGCCTCCAATCCACACGCTTATGCTCGAAGGA
ATAAAGTGTGATGGGTTATTGTTGGTTGCCTTTGTTTATTTATAATTGTTACTGTTTTAATGGTCATTGGCATAGTTTTGGTGTTTATGTTGTGAACTGTTTTCATGGAA
TCGTTTGTAGTTATAACCAAGGTTTAAAGTATCCATATCGATGGAAATATGGAGGTTTGAATTTTACAGAAATTTTGATGGAAATCTTTATTTTGATGGATATTTCTGAA
AAAATTATAAAAACAATCAAAATTAGAAATAAATTTAAATTAATAAGTAAATATTTTATTACTTTC
Protein sequenceShow/hide protein sequence
MARCPLYYYGNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLVIFASFGERYLSSDLFKSIREECENMQHEP