CuGenDBv2

Gene ID	Lsi04G007630
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ferredoxin-thioredoxin reductase, variable chain
Genome location	chr04:7118105..7118650
RNA-Seq Expression	Lsi04G007630
Synteny	Lsi04G007630
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0016310 - phosphorylation (biological process) GO:0030148 - sphingolipid biosynthetic process (biological process) GO:0003951 - NAD+ kinase activity (molecular function) GO:0017050 - D-erythro-sphingosine kinase activity (molecular function)
InterPro domains	IPR004207 - Ferredoxin thioredoxin reductase, alpha chain IPR008990 - Electron transport accessory-like domain superfamily IPR044166 - Ferredoxin-thioredoxin reductase, variable chain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034101.1 sphingoid long-chain bases kinase 1 [Cucumis melo var. makuwa]

2.5e-76

90.06

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Query:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MI IANSIG +P   PSSAS AAR A SMTVFS++DV+SS+SSSVCSLSSVVVNPF CSIRRGRRLFSEV VRSDSGTSSSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAA+IGARVRVKVPLKVYHVAKLP+ANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_004147092.1 ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus]

1.1e-79

93.92

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Query:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MISIANSIG IPS APSSAS AAR A SMTVFS+ADVKSS+SSSVCSLSS+VVNPF CSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAA+IGARVRVKVPLKVYHVAKLPDANLEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_008445916.1 PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo]

2.5e-76

90.06

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Query:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MI IANSIG +P   PSSAS AAR A SMTVFS++DV+SS+SSSVCSLSSVVVNPF CSIRRGRRLFSEV VRSDSGTSSSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAA+IGARVRVKVPLKVYHVAKLP+ANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_023549490.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita pepo subsp. pepo]

2.4e-71

86.19

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Query:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MI++ANSIG IP+ AP+    AARPA SMTVFSS D KSSYS SV SLSSVVVNPF CSIRRGRR FSEV V+SDSGT SSA AVSAATTSLSE+ETDEA
Subjt:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAA+IGARVRVKVPLKVYHVAKLP+A+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_038893043.1 ferredoxin-thioredoxin reductase, variable chain-like [Benincasa hispida]

8.3e-80

93.92

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Query:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MISIANSIG IP+ APSSASAAAR A SMTVFS ADVKSSYSSSVCSLSSVVVNPF CSIRRGRRLFSEVPVRSDSGTS SATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAA+IGARVRVKVPLKVYHVAKLP+ANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY+
Subjt:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KV36 FeThRed_A domain-containing protein

5.3e-80

93.92

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Query:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MISIANSIG IPS APSSAS AAR A SMTVFS+ADVKSS+SSSVCSLSS+VVNPF CSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAA+IGARVRVKVPLKVYHVAKLPDANLEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A1S3BEI2 ferredoxin-thioredoxin reductase, variable chain

1.2e-76

90.06

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Query:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MI IANSIG +P   PSSAS AAR A SMTVFS++DV+SS+SSSVCSLSSVVVNPF CSIRRGRRLFSEV VRSDSGTSSSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAA+IGARVRVKVPLKVYHVAKLP+ANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A5D3D039 Sphingoid long-chain bases kinase 1

1.2e-76

90.06

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Query:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MI IANSIG +P   PSSAS AAR A SMTVFS++DV+SS+SSSVCSLSSVVVNPF CSIRRGRRLFSEV VRSDSGTSSSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAA+IGARVRVKVPLKVYHVAKLP+ANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1H0Z6 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

5.8e-71

85.64

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Query:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MI++ANSIG IP+ AP+    AARPA SMTVFSS D KSSYS SV SLSSVVVNPF CSI RGRR FSEV V+SDSGT SSA AVSAATTSLSE+ETDEA
Subjt:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAA+IGARVRVKVPLKVYHVAKLP+A+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1KDF2 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

2.9e-70

85.08

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Query:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MI++ANSIG IP+ AP+    AARPA SMTVFSS D KSSYSSSV SLSSVVVNPF CSI RGRR FSEV V+SDSGT SSA AVSAA TSLSE+ETDEA
Subjt:  MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAA+IGARVRVKVPL VYHVAKLP+A+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

SwissProt top hits

e value

%identity

Alignment

P38365 Ferredoxin-thioredoxin reductase, variable chain, chloroplastic

1.6e-17

39.77

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Query:  STAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGR-RLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAAKIGARVRV
        +TA S+A+A A   + + +F S   +++ S++VC  S++       +  R R  +  EV ++SDS T       S++++   E+E  +    K+G +V+V
Subjt:  STAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGR-RLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAAKIGARVRV

Query:  KVPLKVYHVAKLPDANL-EGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        K PLKVYHV KLP+  L   M GV+K YV  WKGK +S N P+KVE+ + V  R  VK V HLKEEEFE +
Subjt:  KVPLKVYHVAKLPDANL-EGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

P80680 Ferredoxin-thioredoxin reductase, variable chain

1.0e-24

62.11

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Query:  ATTSLSEEETDEAAAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV
        A+  ++ EE   AAA KIG RVRV  PL+VYHV K PD +++GMEGV+K YV VWKGKRV+AN P+KVEF + VEG+P PV+F AHL+E+EFE+V
Subjt:  ATTSLSEEETDEAAAAKIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV

Arabidopsis top hits

e value

%identity

Alignment

AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

2.9e-30

50.64

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Query:  ASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAAKIGARVRVKVPLKVYHVAKLPD
        +SS ++F    + +SY  S C+ S    NP   +IR    + S   V +D+  SSS        TSL  EE DE A  KIGARVRV VPLKVYHV ++P+
Subjt:  ASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAAKIGARVRVKVPLKVYHVAKLPD

Query:  ANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
          L GMEG +KDYV +WKGK++SANLP+KV+FV  +EGR PVKF  HLKE+EFE +
Subjt:  ANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1

9.3e-29

46.33

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Query:  APSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPF----------YCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAAK
        +P+ A+A  RP+S   + +SA   ++ +++  +L S +V P           + S R+  R      V   S  S +A A  +++ S SEEE +  A AK
Subjt:  APSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPF----------YCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAAK

Query:  IGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IG+RVRV  PLKVYHV ++P+ +LEGMEG LKDYV VWKGKR+SANLPYK+EF   +EGR  VKFV+HLKE+EFE++
Subjt:  IGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATCAGTATTGCGAACAGTATCGGCGCGATACCATCGACGGCGCCGTCGTCGGCGTCGGCGGCTGCTCGTCCAGCCTCTTCTATGACGGTATTCTCTAGTGCTGATGT
GAAATCGTCCTATTCCTCGTCCGTTTGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCTACTGCTCGATTCGAAGAGGGAGAAGATTGTTTAGCGAGGTTCCAGTTAGAT
CAGATTCCGGAACTTCGTCTTCGGCTACAGCTGTTTCGGCGGCGACGACGTCATTGTCAGAGGAAGAGACTGATGAAGCGGCTGCCGCTAAAATTGGAGCCAGAGTTAGG
GTTAAGGTGCCTTTGAAGGTGTATCATGTAGCGAAGTTACCAGATGCGAATCTTGAGGGGATGGAAGGAGTGCTGAAGGACTATGTACGTGTTTGGAAAGGGAAGCGTGT
ATCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCAGTTGAAGGCCGTCCACCAGTCAAATTCGTCGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MISIANSIGAIPSTAPSSASAAARPASSMTVFSSADVKSSYSSSVCSLSSVVVNPFYCSIRRGRRLFSEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAAKIGARVR
VKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

Lsi04G007630 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome