; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G007960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G007960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionexosome complex component RRP41 homolog
Genome locationchr04:7518079..7522186
RNA-Seq ExpressionLsi04G007960
SyntenyLsi04G007960
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0004527 - exonuclease activity (molecular function)
GO:0009022 - tRNA nucleotidyltransferase activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143616.1 exosome complex component RRP41 homolog [Cucumis sativus]1.5e-11783.96Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFV+PEGLR DGRRP E+R++RAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG
        LPIDVFE+VM+LAIEGCKA+A+YIR                            VMLE+TKQLEYHRDG
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG

XP_008445878.1 PREDICTED: exosome complex component RRP41 homolog [Cucumis melo]5.1e-11883.96Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFV+PEGLRLDGRRP E+R++RAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG
        LPIDVFE+VM+LAIEGCKA+A+YIR                           +VML++TKQLEYHRDG
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG

XP_022157614.1 exosome complex component RRP41 homolog [Momordica charantia]1.3e-11885.71Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLR DGRRPMEMRQIR EIGAVSKA+GSAVFEMGNTKV+AAVYGPREVQNRSQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIF+QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LPID+FENVMQLAIEGCKAVASYIRE                           VMLENTK+LEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

XP_022941604.1 exosome complex component RRP41 homolog [Cucurbita moschata]4.6e-11986.09Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LP+D+FENVMQLAIEGCKAVA+YIRE                           VMLE+TK+LEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

XP_038891797.1 exosome complex component RRP41 homolog [Benincasa hispida]2.8e-12488.81Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG
        LPIDVFENVMQLAIEGCKA+ASYIRE                           VML+NTKQLEYHRDG
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG

TrEMBL top hitse value%identityAlignment
A0A0A0KNI9 Uncharacterized protein7.2e-11883.96Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFV+PEGLR DGRRP E+R++RAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQN+SQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG
        LPIDVFE+VM+LAIEGCKA+A+YIR                            VMLE+TKQLEYHRDG
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG

A0A1S3BDQ6 exosome complex component RRP41 homolog2.5e-11883.96Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFV+PEGLRLDGRRP E+R++RAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG
        LPIDVFE+VM+LAIEGCKA+A+YIR                           +VML++TKQLEYHRDG
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG

A0A6J1DWZ5 exosome complex component RRP41 homolog6.5e-11985.71Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLR DGRRPMEMRQIR EIGAVSKA+GSAVFEMGNTKV+AAVYGPREVQNRSQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIF+QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LPID+FENVMQLAIEGCKAVASYIRE                           VMLENTK+LEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

A0A6J1FNX1 exosome complex component RRP41 homolog2.2e-11986.09Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LP+D+FENVMQLAIEGCKAVA+YIRE                           VMLE+TK+LEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

A0A6J1JKC7 exosome complex component RRP41 homolog2.2e-11986.09Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LP+D+FENVMQLAIEGCKAVA+YIRE                           VMLE+TK+LEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

SwissProt top hitse value%identityAlignment
Q5JIR6 Exosome complex component Rrp413.2e-5448.9Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        ++ +   G R+DGR+  E+R I+ E+G +  A+GSA  E G  KVLAAVYGPRE+  +  Q  ++A++R  Y MA FS  +R +KP  DRRS+EIS VIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK
          +E  +L H+ PR+ ID+F+++LQAD GTR A I AA+LALADAGIPM+D+V +C+AG ++   +LDLN  ED+ G  DV V  +P  + +TLLQMD  
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRES
        L  D F   ++LAI+G KAV    RE+
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRES

Q7YRA3 Exosome complex component RRP412.4e-6253.39Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++A+GSA  E GNTK LA VYGP E++ +R++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + +  LP   ++ LL+MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFENVMQLAIEGCKAV
        +L  D  E V++ A    + V
Subjt:  KLPIDVFENVMQLAIEGCKAV

Q921I9 Exosome complex component RRP414.9e-6353.39Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++A+GSA  E GNTK LA VYGP E++ +RS+ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + +  LP   ++ LL+MD+
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFENVMQLAIEGCKAV
        +L  D  E V++ A +  + V
Subjt:  KLPIDVFENVMQLAIEGCKAV

Q9NPD3 Exosome complex component RRP414.9e-6350.84Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++A+GSA  E GNTK LA VYGP E++ +R++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + +  LP   ++ LL+MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFENVMQLAIEGC--------KAVASYIRESAI
        +L  D  E V++ A +          + V  ++RE++I
Subjt:  KLPIDVFENVMQLAIEGC--------KAVASYIRESAI

Q9SP08 Exosome complex component RRP41 homolog3.0e-9771.91Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRS E+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG DVTVG LPKLDKV+LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        KLP++ FE V  LA EGCKA+A  IRE                           V+ ENTKQLEY R
Subjt:  KLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein1.3e-1329.26Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIRQTMEE-CIL
        R DGR P ++R +      + + +GSA +  G+TKVLAAVYGP+    +++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG-------PDVTVGFLPK
        T + P +   + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+ T+  LP+
Subjt:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG-------PDVTVGFLPK

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein1.3e-1329.26Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIRQTMEE-CIL
        R DGR P ++R +      + + +GSA +  G+TKVLAAVYGP+    +++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG-------PDVTVGFLPK
        T + P +   + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+ T+  LP+
Subjt:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG-------PDVTVGFLPK

AT3G61620.1 3'-5'-exoribonuclease family protein2.2e-9871.91Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRS E+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG DVTVG LPKLDKV+LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        KLP++ FE V  LA EGCKA+A  IRE                           V+ ENTKQLEY R
Subjt:  KLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

AT3G61620.2 3'-5'-exoribonuclease family protein2.2e-9871.91Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRS E+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG DVTVG LPKLDKV+LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDA

Query:  KLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        KLP++ FE V  LA EGCKA+A  IRE                           V+ ENTKQLEY R
Subjt:  KLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

AT4G27490.1 3'-5'-exoribonuclease family protein1.1e-2029.03Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIRQTMEECILT
        R DGR   + R    + GAVS A+GSA  E GNTKV+ +V+GPRE   ++   S+   + C  +  NF++    +    D +  E S ++ + +E  I+ 
Subjt:  RLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIRQTMEECILT

Query:  HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFENV
           P++ +D+F  VL++ G   S  I+ A+LALADAGI M D++T+ S   +  + ++D    E+        +  +P   ++T L +  +         
Subjt:  HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFENV

Query:  MQLAIEGCKAVASYIRE
        MQL ++    +   +R+
Subjt:  MQLAIEGCKAVASYIRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCGTGAGCCCTGAAGGACTTCGCCTGGACGGTCGCCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAAATGGGTCTGCCGT
TTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGTGAGTACACCA
TGGCTAATTTCAGTACCGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGCGATCCATAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTTACACAT
TTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACGAGATCAGCATGCATCAATGCTGCAACTTTGGCACTTGCCGATGCTGGAAT
TCCCATGCGTGATATTGTTACTTCCTGCAGCGCTGGATACCTTAATAGCACTCCTCTGCTAGATTTGAATTATGTAGAGGATAGTGCTGGTGGCCCTGATGTCACTGTAG
GCTTTCTACCTAAGTTGGATAAAGTCACTCTTCTTCAGATGGATGCTAAATTACCTATTGACGTATTTGAGAATGTGATGCAACTTGCAATTGAGGGCTGCAAAGCCGTA
GCTAGTTACATTCGAGAATCTGCTATTTTCCATTGGAAAACCATATTGCAACTGATGATGGTTGGATTATTCAAATTTTGTGCTGTTTTTCGTGGACAGGTAATGTTAGA
GAATACGAAGCAACTCGAATATCATCGTGATGGATAG
mRNA sequenceShow/hide mRNA sequence
CAAAATTGAACATTTAACCGTCCTATAGTTTCTTTTTTTCTAAACCCTATTTCACTCCCTCCCAGCCACTACAACCCCCCGCCCCCGCCGTTCCTCCTACCCGCCGCCGT
CTCCGCGGCGGCCGCCGCCGTTACACTCTCATCTACCACAGTCCAGCGTTTCAACGAACTCTCCGCTGCATCCTCCCCCCACAGTCTCTCGCCTCCCCGAGCAATCAGAG
TTACCGTCTCTGATTGTTTTTCATAGAAACACAGTGGTTCAGCACCTAACCCGAACTGACCCTTACCTGCGGGCCTAAAATTGCATTCTAAGTTTGTAACACCCTTTTGC
CCTTACTGTGTTTCGCAAAGATGGAGTTCGTGAGCCCTGAAGGACTTCGCCTGGACGGTCGCCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCT
AAAGCAAATGGGTCTGCCGTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACT
GGTGCGTTGTGAGTACACCATGGCTAATTTCAGTACCGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGCGATCCATAGAGATATCTTTAGTTATTCGCCAGACAATGG
AGGAATGCATTCTTACACATTTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACGAGATCAGCATGCATCAATGCTGCAACTTTG
GCACTTGCCGATGCTGGAATTCCCATGCGTGATATTGTTACTTCCTGCAGCGCTGGATACCTTAATAGCACTCCTCTGCTAGATTTGAATTATGTAGAGGATAGTGCTGG
TGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGTTGGATAAAGTCACTCTTCTTCAGATGGATGCTAAATTACCTATTGACGTATTTGAGAATGTGATGCAACTTGCAA
TTGAGGGCTGCAAAGCCGTAGCTAGTTACATTCGAGAATCTGCTATTTTCCATTGGAAAACCATATTGCAACTGATGATGGTTGGATTATTCAAATTTTGTGCTGTTTTT
CGTGGACAGGTAATGTTAGAGAATACGAAGCAACTCGAATATCATCGTGATGGATAG
Protein sequenceShow/hide protein sequence
MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIRQTMEECILTH
LMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDAKLPIDVFENVMQLAIEGCKAV
ASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG