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Lsi04G008450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G008450
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionViolaxanthin de-epoxidase, chloroplastic
Genome locationchr04:8195062..8200203
RNA-Seq ExpressionLsi04G008450
SyntenyLsi04G008450
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7803805.1 Mitochondrial chaperone BCS1 [Senna tora]1.3e-0467.31Show/hide
Query:  NCLGL--LGESLQNRRMPLIAASTRYSLVKGERIVRSVPTARLRGLQ-VRRG
        NC GL       +NRRMPL+AASTRYSLVKGERIVRSV TARLR  + + RG
Subjt:  NCLGL--LGESLQNRRMPLIAASTRYSLVKGERIVRSVPTARLRGLQ-VRRG

KAF7833781.1 Mitochondrial chaperone BCS1 [Senna tora]1.2e-0536.69Show/hide
Query:  KNRRMPLNTTSTRYSLVKGERIVRSVPIARLP---SQRITVFFIFFFLKKGNFKFIVLLYSISQWDAAMWEPIHSALLHYYLSALNEESFSKDEGQKFKS
        KNRRMPL   STRYSLVKGERIVR V  A L    +   ++F +   LK                            LH             D G +  +
Subjt:  KNRRMPLNTTSTRYSLVKGERIVRSVPIARLP---SQRITVFFIFFFLKKGNFKFIVLLYSISQWDAAMWEPIHSALLHYYLSALNEESFSKDEGQKFKS

Query:  TSNVNVKLKRYTTMSPFPDKFEVHSLTNCLGLLGESLQNRRMPLIAASTRYSLVKGERIVRSVPTARLR
                     ++P P K  +H             +NRRMPL AASTRYSLVKGERIVRSV  A LR
Subjt:  TSNVNVKLKRYTTMSPFPDKFEVHSLTNCLGLLGESLQNRRMPLIAASTRYSLVKGERIVRSVPTARLR

KHG26645.1 Violaxanthin de-epoxidase, chloroplastic [Gossypium arboreum]8.3e-0463.83Show/hide
Query:  EGPSKNRRMPLNTTSTRYSLVKGERIVRSVPIARLPSQRITVFFIFF
        E PSKNRRMPL   STRYSLVKGERIVR V IARL    I++  + +
Subjt:  EGPSKNRRMPLNTTSTRYSLVKGERIVRSVPIARLPSQRITVFFIFF

RDX78838.1 hypothetical protein CR513_40828, partial [Mucuna pruriens]1.7e-0454.39Show/hide
Query:  TLQSNFEVVNIILEGPIPKEGPSKNRRMPLNTTSTRYSLVKGERIVRSVPIARLPSQ
        TLQSN  ++++ +   +  E   KN+ MPLN T TRYSLVKGERIVR V I RL S+
Subjt:  TLQSNFEVVNIILEGPIPKEGPSKNRRMPLNTTSTRYSLVKGERIVRSVPIARLPSQ

TrEMBL top hitse value%identityAlignment
A0A0B0PNT1 Violaxanthin de-epoxidase, chloroplastic4.0e-0463.83Show/hide
Query:  EGPSKNRRMPLNTTSTRYSLVKGERIVRSVPIARLPSQRITVFFIFF
        E PSKNRRMPL   STRYSLVKGERIVR V IARL    I++  + +
Subjt:  EGPSKNRRMPLNTTSTRYSLVKGERIVRSVPIARLPSQRITVFFIFF

A0A371FKI6 Uncharacterized protein (Fragment)8.1e-0554.39Show/hide
Query:  TLQSNFEVVNIILEGPIPKEGPSKNRRMPLNTTSTRYSLVKGERIVRSVPIARLPSQ
        TLQSN  ++++ +   +  E   KN+ MPLN T TRYSLVKGERIVR V I RL S+
Subjt:  TLQSNFEVVNIILEGPIPKEGPSKNRRMPLNTTSTRYSLVKGERIVRSVPIARLPSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCTATAATGATGCTACAACACTGCAATCTAATTTTGAGGTTGTAAACATTATCCTCGAAGGACCCATCCCAAAGGAAGGACCCTCCAAAAATAGGCGTATGCCGCTTAA
TACGACGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGTGCCCATCGCACGGCTCCCATCCCAGCGTATTACTGTCTTCTTCATTTTCTTTTTTT
TAAAAAAAGGGAATTTTAAGTTTATTGTGCTGCTTTACTCAATAAGCCAATGGGATGCAGCCATGTGGGAACCCATTCATTCAGCACTGCTGCACTACTATTTATCAGCA
CTAAACGAAGAGTCATTCTCTAAAGATGAAGGTCAAAAGTTCAAATCTACCTCTAATGTTAATGTTAAGTTGAAAAGGTACACAACCATGAGCCCATTTCCAGACAAGTT
TGAGGTCCACAGCCTAACCAATTGTTTGGGCCTCTTGGGAGAGTCCCTCCAAAATAGGCGTATGCCGCTTATAGCGGCCAGCACACGGTATTCTTTAGTAAAAGGCGAAA
GAATAGTTCGCTCTGTGCCCACCGCACGGCTCCGTGGTTTGCAGGTAAGGCGTGGGTGA
mRNA sequenceShow/hide mRNA sequence
TGCTATAATGATGCTACAACACTGCAATCTAATTTTGAGGTTGTAAACATTATCCTCGAAGGACCCATCCCAAAGGAAGGACCCTCCAAAAATAGGCGTATGCCGCTTAA
TACGACGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGTGCCCATCGCACGGCTCCCATCCCAGCGTATTACTGTCTTCTTCATTTTCTTTTTTT
TAAAAAAAGGGAATTTTAAGTTTATTGTGCTGCTTTACTCAATAAGCCAATGGGATGCAGCCATGTGGGAACCCATTCATTCAGCACTGCTGCACTACTATTTATCAGCA
CTAAACGAAGAGTCATTCTCTAAAGATGAAGGTCAAAAGTTCAAATCTACCTCTAATGTTAATGTTAAGTTGAAAAGGTACACAACCATGAGCCCATTTCCAGACAAGTT
TGAGGTCCACAGCCTAACCAATTGTTTGGGCCTCTTGGGAGAGTCCCTCCAAAATAGGCGTATGCCGCTTATAGCGGCCAGCACACGGTATTCTTTAGTAAAAGGCGAAA
GAATAGTTCGCTCTGTGCCCACCGCACGGCTCCGTGGTTTGCAGGTAAGGCGTGGGTGA
Protein sequenceShow/hide protein sequence
CYNDATTLQSNFEVVNIILEGPIPKEGPSKNRRMPLNTTSTRYSLVKGERIVRSVPIARLPSQRITVFFIFFFLKKGNFKFIVLLYSISQWDAAMWEPIHSALLHYYLSA
LNEESFSKDEGQKFKSTSNVNVKLKRYTTMSPFPDKFEVHSLTNCLGLLGESLQNRRMPLIAASTRYSLVKGERIVRSVPTARLRGLQVRRG