CuGenDBv2

Gene ID	Lsi04G008480
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L35-like
Genome location	chr04:8251797..8253556
RNA-Seq Expression	Lsi04G008480
Synteny	Lsi04G008480
Gene Ontology terms	GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001854 - Ribosomal protein L29/L35 IPR036049 - Ribosomal protein L29/L35 superfamily IPR045059 - 60S ribosomal protein L35

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004150961.1 60S ribosomal protein L35 [Cucumis sativus]

7.8e-40

96.97

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELRQKSKGDLL QLKDLKAELALLRV+KVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

XP_008461617.1 PREDICTED: 60S ribosomal protein L35-like [Cucumis melo]

7.8e-40

96.97

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELRQKSKGDLL QLKDLKAELALLRV+KVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

XP_022134532.1 60S ribosomal protein L35 [Momordica charantia]

1.0e-39

96.97

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELRQKSK DLLTQLKDLKAELALLRV+KVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

XP_022941613.1 60S ribosomal protein L35-like [Cucurbita moschata]

1.0e-39

96.97

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELRQKSK DLLTQLKDLKAELALLRV+KVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

XP_038891782.1 60S ribosomal protein L35-like [Benincasa hispida]

9.3e-41

98.99

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELRQKSKGDLLTQLKDLKAELALLRV+KVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLK6 Uncharacterized protein

3.8e-40

96.97

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELRQKSKGDLL QLKDLKAELALLRV+KVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

A0A1S3CF13 60S ribosomal protein L35-like

3.8e-40

96.97

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELRQKSKGDLL QLKDLKAELALLRV+KVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

A0A6J1BZV3 60S ribosomal protein L35

5.0e-40

96.97

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELRQKSK DLLTQLKDLKAELALLRV+KVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

A0A6J1FSL2 60S ribosomal protein L35-like

5.0e-40

96.97

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELRQKSK DLLTQLKDLKAELALLRV+KVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

A0A6J1JVN4 60S ribosomal protein L35

1.1e-39

95.96

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELRQKSK DLLTQLKDLKAEL+LLRV+KVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

SwissProt top hits

e value

%identity

Alignment

O80626 60S ribosomal protein L35-2

6.9e-39

90.91

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELR+KSK DL  QLK+ KAELALLRV+KVTGGAPNKLSKIKVVR SIAQVLTVISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

Q9LZ41 60S ribosomal protein L35-4

1.2e-38

90.91

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELR KSK DL  QLK+ KAELALLRV+KVTGGAPNKLSKIKVVR SIAQVLTVISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

Q9M3D2 60S ribosomal protein L35-3

1.5e-38

90.91

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELR KSK DL TQLK+LKAELA LRV+KVTGGAPNKLSKIKVVR SIAQVLTV SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

Q9M5L0 60S ribosomal protein L35

8.1e-40

91.92

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELRQK+K +LL QLKDLKAELALLRV+KVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

Q9SF53 60S ribosomal protein L35-1

6.9e-39

90.91

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELR+KSK DL  QLK+LKAELALLRV+KVTGGAPNKLSKIKVVR SIAQVLTV SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

Arabidopsis top hits

e value

%identity

Alignment

AT2G39390.1 Ribosomal L29 family protein

4.9e-40

90.91

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELR+KSK DL  QLK+ KAELALLRV+KVTGGAPNKLSKIKVVR SIAQVLTVISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

AT3G09500.1 Ribosomal L29 family protein

4.9e-40

90.91

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELR+KSK DL  QLK+LKAELALLRV+KVTGGAPNKLSKIKVVR SIAQVLTV SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

AT3G55170.1 Ribosomal L29 family protein

1.1e-39

90.91

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELR KSK DL TQLK+LKAELA LRV+KVTGGAPNKLSKIKVVR SIAQVLTV SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

AT3G55170.2 Ribosomal L29 family protein

1.1e-39

90.91

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELR KSK DL TQLK+LKAELA LRV+KVTGGAPNKLSKIKVVR SIAQVLTV SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

AT5G02610.1 Ribosomal L29 family protein

8.4e-40

90.91

Show/hide

Query:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ
        MARIKVHELR KSK DL  QLK+ KAELALLRV+KVTGGAPNKLSKIKVVR SIAQVLTVISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ
Subjt:  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGAGAATTAAGGTTCATGAGCTTAGACAGAAGTCGAAGGGGGATCTTTTGACCCAGCTTAAGGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTCTCTAAGGTCAC
TGGTGGTGCTCCTAACAAGCTCTCCAAAATTAAGGTAGTGAGGTTGTCAATCGCTCAGGTGTTGACAGTGATTTCTCAGAAACAGAAGTCTGCTCTTAGGGAAGCTTACA
AGAAGAAGAAGCTTTTGCCTCTTGATTTGCGCCCCAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAAATGATGCTCCAAGTATTGGAAGCCTTGTAGAT
AGTTTCCATGCCTTAATACTATTAACAAAACCCTCAGTTTTATGCCTTAGAATGTACGTATTTGAGATCATAACTCAGTTTTTAACGGTAATGAATATTTGCATCTCTAA
AGACAGAGCGACAGAAGAAGAAAGAGATGTACTACCCATTGAGGAAGTACGCCATCAAGGTGTAAGCTTTAGAGGGAATCGATTGATTGTCCATGGTATCATGCATCTTT
TACTCATTTTGGCTTTTGATTTATCTATAACTTTATTCGGACCCGAGTGCCTATTCTCAATCTTGTTAGATCTTCGGACTTTGAAGTCTTTCCTTTTCCATGTAATACTT
TAG

mRNA sequence

Show/hide mRNA sequence

GTTTCTTCAACCTAGGGTTTTGCTAGTTGCAGACCTCCGCCGAATCCCAAAACCCAACAGCCGGTCTCTGCTTCTCAGATTCTAATGGCGAGAATTAAGGTTCATGAGCT
TAGACAGAAGTCGAAGGGGGATCTTTTGACCCAGCTTAAGGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTCTCTAAGGTCACTGGTGGTGCTCCTAACAAGCTCTCCA
AAATTAAGGTAGTGAGGTTGTCAATCGCTCAGGTGTTGACAGTGATTTCTCAGAAACAGAAGTCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTTGAT
TTGCGCCCCAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAAATGATGCTCCAAGTATTGGAAGCCTTGTAGATAGTTTCCATGCCTTAATACTATTAAC
AAAACCCTCAGTTTTATGCCTTAGAATGTACGTATTTGAGATCATAACTCAGTTTTTAACGGTAATGAATATTTGCATCTCTAAAGACAGAGCGACAGAAGAAGAAAGAG
ATGTACTACCCATTGAGGAAGTACGCCATCAAGGTGTAAGCTTTAGAGGGAATCGATTGATTGTCCATGGTATCATGCATCTTTTACTCATTTTGGCTTTTGATTTATCT
ATAACTTTATTCGGACCCGAGTGCCTATTCTCAATCTTGTTAGATCTTCGGACTTTGAAGTCTTTCCTTTTCCATGTAATACTTTAGTTTTCCAAGTTATAATGAGATGG
TTTTGGTTATTAATGACCTCAGGCAGTGCAAGCTTTTGCCAAAATGAATGTGCTCTGATCTTAAACCATGTGTGTGTGTGAGAGATTTGTCTGGATTCAGATTTTTATCT
ATCAAGCTGTAAATCTGCAGAAATTTGGTGGCTTCTTTTTTTTACCTTAGTTTAAATTTTGACGAGTAGGATCAAGTGATGAACTCATTAAATCTGAAGAACTCAGTCCA
GACAAAATTCTATGTAAATGCTTTAATCA

Protein sequence

Show/hide protein sequence

MARIKVHELRQKSKGDLLTQLKDLKAELALLRVSKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQNDAPSIGSLVD
SFHALILLTKPSVLCLRMYVFEIITQFLTVMNICISKDRATEEERDVLPIEEVRHQGVSFRGNRLIVHGIMHLLLILAFDLSITLFGPECLFSILLDLRTLKSFLFHVIL

Lsi04G008480 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome