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Lsi04G009020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G009020
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPPIase cyclophilin-type domain-containing protein
Genome locationchr04:9063816..9065220
RNA-Seq ExpressionLsi04G009020
SyntenyLsi04G009020
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4388147.1 hypothetical protein G4B88_021843 [Cannabis sativa]1.0e-1457.14Show/hide
Query:  PANVITPPGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRR
        P  V T P AAGCRRVT  T P PL T+ PRC   A +   S  S PLP SK W      LS V  TGG GLFLDPGGRP GRR
Subjt:  PANVITPPGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRR

KAG6549484.1 hypothetical protein Mapa_009020 [Marchantia paleacea]8.0e-1254.76Show/hide
Query:  PANVITPPGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRR
        P  V   PGAAGCR VTLAT P P  T TPRC   AK   LS  S+P   SKTW      +S V   GG GLF DPGG PRG R
Subjt:  PANVITPPGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRR

PON57432.1 hypothetical protein PanWU01x14_173380 [Parasponia andersonii]4.1e-1650.43Show/hide
Query:  PGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRRVLELVPGS--------ALSWLPE
        PG AG RRVTL T P PL  +TPR RR AK+  LSTMS P  IS TW+RRA  LS V   GGFGLFLDP G P GR  + L   S           W P 
Subjt:  PGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRRVLELVPGS--------ALSWLPE

Query:  LFSSSAASKLCFNGV
        L SSS+  +  F  +
Subjt:  LFSSSAASKLCFNGV

PON73470.1 hypothetical protein TorRG33x02_249530, partial [Trema orientale]1.4e-1148.51Show/hide
Query:  SAPTTMPPTTCPCPPANVITPP-----------------------------GAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRR
        S PTT+PPTTCPCPPA  +  P                             GA G R VTL T P PLRT+TPR RR AK   LS MS PL IS TWLRR
Subjt:  SAPTTMPPTTCPCPPANVITPP-----------------------------GAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRR

Query:  A
        A
Subjt:  A

PON92882.1 hypothetical protein TorRG33x02_111610 [Trema orientale]1.5e-1559.55Show/hide
Query:  PGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRRVLELVPGSALSW
        PG AG RRVTL T P PL  +TPR RR AK+  LSTMS P  IS TW+RRA  LS V   GGFGLFLDP G P GR  L+++    LSW
Subjt:  PGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRRVLELVPGSALSW

TrEMBL top hitse value%identityAlignment
A0A0A9F391 Uncharacterized protein3.0e-2555.56Show/hide
Query:  ITGPVATSAPTTMPPTTCPCPP----ANVITPPGA--------------------------AGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLP
        +TGP ATS+P T+PPTTCPCPP    A+ + P GA                          AGCR VTL T P PL TETPR RR  K  M STMS PL 
Subjt:  ITGPVATSAPTTMPPTTCPCPP----ANVITPPGA--------------------------AGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLP

Query:  ISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRR
        IS TW R   GLS VTTTGGFGLFLDPGG PRGRR
Subjt:  ISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRR

A0A0A9S0X7 Uncharacterized protein4.4e-2454.81Show/hide
Query:  ITGPVATSAPTTMPPTTCPCPP----ANVITPPGA--------------------------AGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLP
        +TGP ATS+P T+PPTTCPCPP    A+ + P GA                          AG R VTL T P PLRTETPR RR     M STMS PL 
Subjt:  ITGPVATSAPTTMPPTTCPCPP----ANVITPPGA--------------------------AGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLP

Query:  ISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRR
        IS TW R   GLS VTTTGGFGLFLDPGG PRGRR
Subjt:  ISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRR

A0A2P5C8P9 Uncharacterized protein2.0e-1650.43Show/hide
Query:  PGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRRVLELVPGS--------ALSWLPE
        PG AG RRVTL T P PL  +TPR RR AK+  LSTMS P  IS TW+RRA  LS V   GGFGLFLDP G P GR  + L   S           W P 
Subjt:  PGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRRVLELVPGS--------ALSWLPE

Query:  LFSSSAASKLCFNGV
        L SSS+  +  F  +
Subjt:  LFSSSAASKLCFNGV

A0A2P5F511 Uncharacterized protein7.5e-1659.55Show/hide
Query:  PGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRRVLELVPGSALSW
        PG AG RRVTL T P PL  +TPR RR AK+  LSTMS P  IS TW+RRA  LS V   GGFGLFLDP G P GR  L+++    LSW
Subjt:  PGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRRVLELVPGSALSW

A0A7J6GYX6 Uncharacterized protein4.9e-1557.14Show/hide
Query:  PANVITPPGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRR
        P  V T P AAGCRRVT  T P PL T+ PRC   A +   S  S PLP SK W      LS V  TGG GLFLDPGGRP GRR
Subjt:  PANVITPPGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCAAACTCGTGAGAACGCGCCTTCACGGATTTTTATAAATGTTCCTCTAAACCATAATACTATGCATATTGGAAAGAAGAATGTTCCAGACTTGTCTCCTGCGGC
CACCTCCTCGTCCTCGAGCGGCAGCCGTTCGAATGTCGCATTGGTGAAAGTGGCAGCGATGACGATAACTGGACCGGTTGCAACGAGTGCACCGACGACAATGCCACCAA
CGACCTGCCCCTGCCCGCCAGCCAACGTAATAACGCCGCCAGGAGCTGCCGGATGCCGGAGAGTAACATTGGCGACAACCCCATTTCCACTAAGAACTGAAACTCCTCGT
TGCCGGCGCTGGGCAAAGTTGGAGATGCTTTCAACGATGTCGGTGCCGCTACCGATTTCCAAAACGTGGCTCCGGAGGGCATCGGGGCTCTCCTTCGTGACAACCACCGG
TGGCTTTGGCTTGTTCTTAGATCCCGGCGGCCGGCCACGAGGGCGGCGCGTGCTTGAACTGGTGCCTGGCTCGGCTCTCTCATGGCTACCGGAGTTGTTCTCTTCATCAG
CAGCTTCTAAGCTTTGCTTTAATGGAGTCGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCAAACTCGTGAGAACGCGCCTTCACGGATTTTTATAAATGTTCCTCTAAACCATAATACTATGCATATTGGAAAGAAGAATGTTCCAGACTTGTCTCCTGCGGC
CACCTCCTCGTCCTCGAGCGGCAGCCGTTCGAATGTCGCATTGGTGAAAGTGGCAGCGATGACGATAACTGGACCGGTTGCAACGAGTGCACCGACGACAATGCCACCAA
CGACCTGCCCCTGCCCGCCAGCCAACGTAATAACGCCGCCAGGAGCTGCCGGATGCCGGAGAGTAACATTGGCGACAACCCCATTTCCACTAAGAACTGAAACTCCTCGT
TGCCGGCGCTGGGCAAAGTTGGAGATGCTTTCAACGATGTCGGTGCCGCTACCGATTTCCAAAACGTGGCTCCGGAGGGCATCGGGGCTCTCCTTCGTGACAACCACCGG
TGGCTTTGGCTTGTTCTTAGATCCCGGCGGCCGGCCACGAGGGCGGCGCGTGCTTGAACTGGTGCCTGGCTCGGCTCTCTCATGGCTACCGGAGTTGTTCTCTTCATCAG
CAGCTTCTAAGCTTTGCTTTAATGGAGTCGAATAA
Protein sequenceShow/hide protein sequence
MFQTRENAPSRIFINVPLNHNTMHIGKKNVPDLSPAATSSSSSGSRSNVALVKVAAMTITGPVATSAPTTMPPTTCPCPPANVITPPGAAGCRRVTLATTPFPLRTETPR
CRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRRVLELVPGSALSWLPELFSSSAASKLCFNGVE